MGE detailed information
MGE type: Genomic_island MGE length: 45680 bp
Accession: NZ_AP024547 Location: 2473151..2518830 Organism: Vibrio cholerae strain BCH-01536 Replicon: chromosome
Accession: NZ_AP024547 Location: 2473151..2518830 Organism: Vibrio cholerae strain BCH-01536 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J77_RS11265 | 2468261..2468695 | - | 435 | WP_000815876.1 | type II toxin-antitoxin system RatA family toxin | - |
| K6J77_RS11270 | 2468880..2469365 | + | 486 | WP_000162689.1 | SsrA-binding protein SmpB | - |
| K6J77_RS11280 | 2469967..2471236 | + | 1270 | Protein_2166 | integrase domain-containing protein | - |
| K6J77_RS11285 | 2471241..2471641 | + | 401 | Protein_2167 | transposase | - |
| K6J77_RS11290 | 2472284..2472520 | + | 237 | WP_001919887.1 | tyrosine-type recombinase/integrase | - |
| K6J77_RS11295 | 2473151..2477713 | - | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| K6J77_RS11300 | 2477886..2478533 | + | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| K6J77_RS11305 | 2478536..2479444 | - | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| K6J77_RS11310 | 2479453..2479890 | - | 438 | WP_001899524.1 | RDD family protein | - |
| K6J77_RS11315 | 2479942..2480711 | - | 770 | Protein_2173 | accessory colonization factor AcfC | - |
| K6J77_RS11320 | 2480717..2482597 | - | 1881 | WP_000672505.1 | methyl-accepting chemotaxis protein AcfB | - |
| K6J77_RS11325 | 2482604..2483365 | - | 762 | WP_000456980.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| K6J77_RS11330 | 2483365..2484193 | - | 829 | Protein_2176 | pilus/toxin transcriptional regulator ToxT | - |
| K6J77_RS11335 | 2484399..2485415 | - | 1017 | WP_001269573.1 | colonization factor TcpF | - |
| K6J77_RS11340 | 2485425..2486447 | - | 1023 | WP_000691946.1 | toxin-coregulated pilus assembly protein TcpE | - |
| K6J77_RS11345 | 2486422..2487933 | - | 1512 | WP_000020697.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| K6J77_RS11350 | 2487923..2488381 | - | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| K6J77_RS11355 | 2488397..2489233 | - | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| K6J77_RS11360 | 2489221..2489676 | - | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| K6J77_RS11365 | 2489669..2491138 | - | 1470 | WP_000750979.1 | toxin-coregulated pilus secretin TcpC | - |
| K6J77_RS11370 | 2491141..2491593 | - | 453 | WP_000742753.1 | toxin-coregulated pilus protein TcpQ | - |
| K6J77_RS11375 | 2491593..2492885 | - | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| K6J77_RS11380 | 2492965..2493639 | - | 675 | WP_001176375.1 | toxin-coregulated pilus major pilin TcpA | - |
| K6J77_RS11385 | 2494183..2494485 | - | 303 | WP_001911312.1 | hypothetical protein | - |
| K6J77_RS11390 | 2494579..2495245 | - | 667 | Protein_2188 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| K6J77_RS11395 | 2495697..2497547 | + | 1851 | WP_025986319.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| K6J77_RS11400 | 2497823..2498317 | - | 495 | WP_000218964.1 | thiol peroxidase | - |
| K6J77_RS11405 | 2498427..2499365 | - | 939 | WP_001232137.1 | hypothetical protein | - |
| K6J77_RS18915 | 2499362..2503959 | - | 4598 | Protein_2192 | hypothetical protein | - |
| K6J77_RS11420 | 2504072..2507113 | - | 3042 | WP_001880619.1 | M66 family metalloprotease | - |
| K6J77_RS11425 | 2507293..2508813 | + | 1521 | WP_000640055.1 | aldehyde dehydrogenase family protein | - |
| K6J77_RS11430 | 2509155..2509835 | + | 681 | Protein_2195 | IS5 family transposase | - |
| K6J77_RS11435 | 2509861..2510838 | - | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| K6J77_RS11440 | 2511442..2512803 | + | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| K6J77_RS11445 | 2512800..2513267 | + | 468 | WP_000804849.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| K6J77_RS11450 | 2513695..2514273 | + | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| K6J77_RS11455 | 2514277..2517213 | + | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| K6J77_RS11460 | 2517283..2517987 | + | 705 | WP_001880605.1 | nuclease-related domain-containing protein | - |
| K6J77_RS11465 | 2518321..2518830 | - | 510 | WP_001077909.1 | hypothetical protein | - |
| K6J77_RS11470 | 2519028..2520707 | - | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| K6J77_RS11475 | 2520930..2521613 | + | 684 | WP_000841479.1 | VC0807 family protein | - |
| K6J77_RS11480 | 2521681..2523297 | - | 1617 | WP_000620446.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|