MGE detailed information
MGE type: Conjugative plasmid MGE length: 126311 bp
Accession: NZ_AP024113 Location: 1..126311 Organism: Escherichia coli strain ECSC054 Replicon: plasmid ECSC054_P1
Accession: NZ_AP024113 Location: 1..126311 Organism: Escherichia coli strain ECSC054 Replicon: plasmid ECSC054_P1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FE985_RS25220 (1) | 1..978 | + | 978 | WP_000361612.1 | RepB family plasmid replication initiator protein | - |
| FE985_RS25225 (1257) | 1257..1997 | - | 741 | WP_001066947.1 | tyrosine-type recombinase/integrase | - |
| FE985_RS25230 (2118) | 2118..2306 | - | 189 | WP_001332784.1 | hypothetical protein | - |
| FE985_RS25235 (2668) | 2668..3837 | + | 1170 | WP_001072359.1 | hypothetical protein | - |
| FE985_RS25240 (4063) | 4063..4238 | - | 176 | Protein_4 | IS3 family transposase | - |
| FE985_RS25245 (4683) | 4683..4898 | - | 216 | WP_250147777.1 | adhesin biosynthesis transcription regulatory family protein | - |
| FE985_RS25250 (5492) | 5492..5916 | - | 425 | Protein_6 | transposase | - |
| FE985_RS25260 (7274) | 7274..7522 | - | 249 | Protein_8 | IS21 family transposase | - |
| FE985_RS25265 (8005) | 8005..8757 | + | 753 | WP_000471454.1 | fimbria/pilus periplasmic chaperone | - |
| FE985_RS25270 (8784) | 8784..11336 | + | 2553 | WP_001563703.1 | fimbria/pilus outer membrane usher protein | - |
| FE985_RS25275 (11352) | 11352..11768 | + | 417 | WP_001563702.1 | AfaD family invasin | - |
| FE985_RS25280 (11882) | 11882..12367 | + | 486 | WP_001545321.1 | Dr family adhesin structural subunit | - |
| FE985_RS25290 (14137) | 14137..14553 | + | 417 | WP_000466682.1 | SdiA-regulated domain-containing protein | - |
| FE985_RS25295 (14758) | 14758..15489 | - | 732 | WP_224955279.1 | AraC family transcriptional regulator | - |
| FE985_RS25300 (15874) | 15874..16379 | + | 506 | Protein_16 | transposase | - |
| FE985_RS25305 (16372) | 16372..16485 | + | 114 | Protein_17 | integrase core domain-containing protein | - |
| FE985_RS25310 (16635) | 16635..17633 | + | 999 | WP_000756334.1 | ABC transporter substrate-binding protein | - |
| FE985_RS25315 (17633) | 17633..18670 | + | 1038 | WP_001545318.1 | iron ABC transporter permease | - |
| FE985_RS25320 (18670) | 18670..19431 | + | 762 | WP_000020504.1 | ABC transporter ATP-binding protein | - |
| FE985_RS25325 (19488) | 19488..20675 | + | 1188 | WP_025999368.1 | MFS transporter | - |
| FE985_RS25330 (20753) | 20753..21028 | - | 276 | WP_000877662.1 | bacteriocin immunity protein | - |
| FE985_RS25335 (21386) | 21386..21685 | - | 300 | WP_000119542.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| FE985_RS25340 (21675) | 21675..21938 | - | 264 | WP_001089474.1 | hypothetical protein | - |
| FE985_RS26210 (21958) | 21958..22095 | - | 138 | Protein_25 | XRE family transcriptional regulator | - |
| FE985_RS25350 (22515) | 22515..22997 | - | 483 | WP_001337004.1 | hypothetical protein | - |
| FE985_RS25355 (23114) | 23114..23962 | - | 849 | WP_001057995.1 | 3'-5' exonuclease | - |
| FE985_RS25360 (24078) | 24078..24227 | - | 150 | Protein_28 | IS3 family transposase | - |
| FE985_RS25365 (24266) | 24266..24454 | - | 189 | Protein_29 | transposase domain-containing protein | - |
| FE985_RS25370 (24515) | 24515..24829 | + | 315 | Protein_30 | IS110 family transposase | - |
| FE985_RS25380 (26137) | 26137..26598 | + | 462 | Protein_32 | IS5 family transposase | - |
| FE985_RS25385 (26748) | 26748..27380 | - | 633 | Protein_33 | histidine-type phosphatase | - |
| FE985_RS25390 (27502) | 27502..27987 | - | 486 | WP_000874189.1 | hypothetical protein | - |
| FE985_RS25395 (28012) | 28012..28497 | - | 486 | WP_001554949.1 | TlpA disulfide reductase family protein | - |
| FE985_RS25400 (28484) | 28484..29179 | - | 696 | WP_000117262.1 | ABC transporter ATP-binding protein | - |
| FE985_RS25405 (29184) | 29184..30314 | - | 1131 | WP_001563733.1 | ABC transporter permease | - |
| FE985_RS25410 (30304) | 30304..31587 | - | 1284 | WP_000964653.1 | ABC transporter permease | - |
| FE985_RS25415 (31590) | 31590..32969 | - | 1380 | WP_059339468.1 | Fe-S-containing protein | - |
| FE985_RS25420 (33073) | 33073..33600 | - | 528 | WP_000178050.1 | iron transporter | - |
| FE985_RS25425 (33641) | 33641..35527 | - | 1887 | WP_137445201.1 | FTR1 family protein | - |
| FE985_RS25430 (35874) | 35874..36635 | - | 762 | WP_039719976.1 | Na(+)-translocating NADH-quinone reductase subunit C | - |
| FE985_RS25435 (37022) | 37022..37726 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| FE985_RS25440 (37780) | 37780..37947 | + | 168 | Protein_44 | IS110 family transposase | - |
| FE985_RS25445 (38325) | 38325..39797 | - | 1473 | WP_000621194.1 | ATP-binding protein | - |
| FE985_RS25450 (39794) | 39794..40516 | - | 723 | WP_001057737.1 | response regulator transcription factor | - |
| FE985_RS25455 (40658) | 40658..41257 | + | 600 | WP_001177183.1 | cytochrome b/b6 domain-containing protein | - |
| FE985_RS25460 (41268) | 41268..42038 | + | 771 | WP_000712166.1 | molybdopterin-dependent oxidoreductase | - |
| FE985_RS25465 (42068) | 42068..42316 | + | 249 | WP_000738203.1 | hypothetical protein | - |
| FE985_RS25470 (42466) | 42466..42564 | - | 99 | WP_137491101.1 | transposase | - |
| FE985_RS25475 (42757) | 42757..43065 | + | 309 | Protein_51 | transposase | - |
| FE985_RS25485 (44093) | 44093..44950 | - | 858 | WP_000774297.1 | incFII family plasmid replication initiator RepA | - |
| FE985_RS25490 (44943) | 44943..45425 | - | 483 | WP_001273588.1 | hypothetical protein | - |
| FE985_RS26215 (45418) | 45418..45465 | - | 48 | WP_229471593.1 | hypothetical protein | - |
| FE985_RS26220 (45456) | 45456..45707 | + | 252 | WP_223195197.1 | replication protein RepA | - |
| FE985_RS25500 (45724) | 45724..45981 | - | 258 | WP_000083845.1 | replication regulatory protein RepA | - |
| FE985_RS25505 (46265) | 46265..46414 | - | 150 | WP_001312851.1 | Hok/Gef family protein | Toxin Detail |
| - (46458) | 46458..46519 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (46458) | 46458..46519 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (46458) | 46458..46519 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| - (46458) | 46458..46519 | + | 62 | NuclAT_1 | - | Antitoxin Detail |
| FE985_RS25510 (46775) | 46775..46849 | - | 75 | Protein_58 | endonuclease | - |
| FE985_RS25515 (47095) | 47095..47307 | - | 213 | WP_001299730.1 | ANR family transcriptional regulator | - |
| FE985_RS25520 (47443) | 47443..48003 | - | 561 | WP_000139315.1 | fertility inhibition protein FinO | - |
| FE985_RS25525 (48106) | 48106..48966 | - | 861 | WP_000704513.1 | alpha/beta hydrolase | - |
| FE985_RS25530 (49025) | 49025..49519 | - | 495 | WP_001563729.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| FE985_RS25535 (49539) | 49539..54809 | - | 5271 | WP_123677328.1 | conjugative transfer relaxase/helicase TraI | - |
| FE985_RS25540 (54891) | 54891..55118 | + | 228 | WP_000450520.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| FE985_RS25545 (55118) | 55118..55516 | + | 399 | WP_000911333.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| FE985_RS25550 (55525) | 55525..57678 | - | 2154 | WP_039719975.1 | type IV conjugative transfer system coupling protein TraD | - |
| FE985_RS25555 (57931) | 57931..58662 | - | 732 | WP_000850422.1 | conjugal transfer complement resistance protein TraT | - |
| FE985_RS25560 (58676) | 58676..59185 | - | 510 | WP_000628105.1 | conjugal transfer entry exclusion protein TraS | - |
| FE985_RS25565 (59182) | 59182..62007 | - | 2826 | WP_001563720.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| FE985_RS25570 (62004) | 62004..63377 | - | 1374 | WP_000944319.1 | conjugal transfer pilus assembly protein TraH | - |
| FE985_RS26225 (63364) | 63364..63756 | - | 393 | Protein_71 | F-type conjugal transfer protein TrbF | - |
| FE985_RS25575 (63743) | 63743..64084 | - | 342 | WP_001442101.1 | P-type conjugative transfer protein TrbJ | - |
| FE985_RS25580 (64014) | 64014..64559 | - | 546 | WP_001563719.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| FE985_RS25585 (64546) | 64546..64830 | - | 285 | WP_000624108.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| FE985_RS25590 (64911) | 64911..65186 | + | 276 | WP_001513501.1 | hypothetical protein | - |
| FE985_RS25595 (65188) | 65188..65535 | - | 348 | WP_137445148.1 | conjugal transfer protein TrbA | - |
| FE985_RS25600 (65551) | 65551..66294 | - | 744 | WP_001030378.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| FE985_RS25605 (66287) | 66287..66544 | - | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| FE985_RS25610 (66571) | 66571..68379 | - | 1809 | WP_000821867.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| FE985_RS25615 (68376) | 68376..69014 | - | 639 | WP_071686675.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| FE985_RS25620 (69023) | 69023..70015 | - | 993 | WP_000830183.1 | conjugal transfer pilus assembly protein TraU | - |
| FE985_RS25625 (70012) | 70012..70644 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| FE985_RS25630 (70641) | 70641..71027 | - | 387 | WP_000099688.1 | type-F conjugative transfer system protein TrbI | - |
| FE985_RS25635 (71024) | 71024..73651 | - | 2628 | WP_039720053.1 | type IV secretion system protein TraC | - |
| FE985_RS25640 (73811) | 73811..74032 | - | 222 | WP_001278690.1 | conjugal transfer protein TraR | - |
| FE985_RS25645 (74167) | 74167..74682 | - | 516 | WP_000809838.1 | type IV conjugative transfer system lipoprotein TraV | - |
| FE985_RS25650 (74679) | 74679..74930 | - | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| FE985_RS25655 (74942) | 74942..75139 | - | 198 | WP_001324648.1 | conjugal transfer protein TrbD | - |
| FE985_RS25660 (75126) | 75126..75716 | - | 591 | WP_000002787.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| FE985_RS25665 (75706) | 75706..76887 | - | 1182 | Protein_90 | conjugal transfer protein TraB | - |
| FE985_RS25670 (76921) | 76921..79926 | - | 3006 | WP_001143760.1 | Tn3-like element Tn3 family transposase | - |
| FE985_RS25675 (80090) | 80090..80647 | + | 558 | WP_001235713.1 | recombinase family protein | - |
| FE985_RS25680 (80830) | 80830..81690 | + | 861 | WP_000027057.1 | broad-spectrum class A beta-lactamase TEM-1 | - |
| FE985_RS25685 (81837) | 81837..82088 | - | 252 | Protein_94 | conjugal transfer protein TraB | - |
| FE985_RS25690 (82088) | 82088..82816 | - | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| FE985_RS25695 (82803) | 82803..83369 | - | 567 | WP_001563715.1 | type IV conjugative transfer system protein TraE | - |
| FE985_RS25700 (83391) | 83391..83702 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| FE985_RS25705 (83717) | 83717..84082 | - | 366 | WP_000340276.1 | type IV conjugative transfer system pilin TraA | - |
| FE985_RS25710 (84116) | 84116..84343 | - | 228 | WP_001254386.1 | conjugal transfer relaxosome protein TraY | - |
| FE985_RS25715 (84437) | 84437..85123 | - | 687 | WP_001563714.1 | PAS domain-containing protein | - |
| FE985_RS25720 (85313) | 85313..85696 | - | 384 | WP_001563713.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| FE985_RS25725 (86030) | 86030..86620 | + | 591 | WP_001375132.1 | transglycosylase SLT domain-containing protein | - |
| FE985_RS25730 (86916) | 86916..87737 | - | 822 | WP_137445206.1 | DUF932 domain-containing protein | - |
| FE985_RS25735 (87856) | 87856..88142 | - | 287 | Protein_104 | hypothetical protein | - |
| FE985_RS25740 (88167) | 88167..88373 | - | 207 | WP_000547965.1 | hypothetical protein | - |
| FE985_RS25745 (88443) | 88443..88739 | + | 297 | Protein_106 | hypothetical protein | - |
| FE985_RS25750 (89040) | 89040..89165 | - | 126 | WP_096937776.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| FE985_RS26230 (89107) | 89107..89256 | - | 150 | Protein_108 | DUF5431 family protein | - |
| - (89263) | 89263..89461 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| - (89263) | 89263..89461 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| - (89263) | 89263..89461 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| - (89263) | 89263..89461 | - | 199 | NuclAT_0 | - | Antitoxin Detail |
| FE985_RS25755 (89430) | 89430..90192 | - | 763 | Protein_109 | plasmid SOS inhibition protein A | - |
| FE985_RS25760 (90189) | 90189..90623 | - | 435 | WP_000845928.1 | conjugation system SOS inhibitor PsiB | - |
| FE985_RS25765 (90678) | 90678..91517 | - | 840 | Protein_111 | hypothetical protein | - |
| FE985_RS25770 (91712) | 91712..93253 | + | 1542 | WP_001298859.1 | IS21-like element ISEc12 family transposase | - |
| FE985_RS25775 (93268) | 93268..94014 | + | 747 | WP_001016257.1 | IS21-like element ISEc12 family helper ATPase IstB | - |
| FE985_RS25780 (94101) | 94101..95222 | - | 1122 | Protein_114 | ParB/RepB/Spo0J family partition protein | - |
| FE985_RS25785 (95288) | 95288..95521 | - | 234 | WP_000005990.1 | DUF905 family protein | - |
| FE985_RS25790 (95578) | 95578..96117 | - | 540 | WP_000290801.1 | single-stranded DNA-binding protein | - |
| FE985_RS25795 (96435) | 96435..96945 | + | 511 | Protein_117 | hypothetical protein | - |
| FE985_RS25800 (96915) | 96915..97106 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| FE985_RS25805 (97103) | 97103..97525 | - | 423 | WP_000271685.1 | DUF1380 family protein | - |
| FE985_RS25810 (97572) | 97572..97997 | - | 426 | WP_001198920.1 | antirestriction protein | - |
| FE985_RS25815 (98411) | 98411..99187 | - | 777 | WP_001005032.1 | hypothetical protein | - |
| FE985_RS25820 (99233) | 99233..99787 | - | 555 | WP_077635223.1 | DUF1380 family protein | - |
| FE985_RS25825 (99681) | 99681..99902 | - | 222 | WP_001104904.1 | hypothetical protein | - |
| FE985_RS25830 (99903) | 99903..100586 | - | 684 | WP_000085939.1 | DNA methylase | - |
| FE985_RS25835 (100663) | 100663..100968 | - | 306 | WP_010892536.1 | hypothetical protein | - |
| FE985_RS25840 (100972) | 100972..101873 | - | 902 | Protein_126 | DUF1281 domain-containing protein | - |
| FE985_RS25845 (102654) | 102654..103625 | - | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| FE985_RS25850 (103625) | 103625..104791 | - | 1167 | WP_000772446.1 | plasmid-partitioning protein SopA | - |
| FE985_RS25855 (105379) | 105379..106134 | - | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| FE985_RS25860 (106856) | 106856..107662 | - | 807 | WP_000016970.1 | site-specific integrase | - |
| FE985_RS25865 (107663) | 107663..107968 | - | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| FE985_RS25870 (107970) | 107970..108188 | - | 219 | WP_000813630.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| FE985_RS25875 (108816) | 108816..109046 | + | 231 | WP_001261286.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| FE985_RS25880 (109043) | 109043..109459 | + | 417 | WP_001034044.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| FE985_RS25885 (109534) | 109534..111099 | + | 1566 | WP_001128474.1 | AAA family ATPase | - |
| FE985_RS25890 (111084) | 111084..112106 | + | 1023 | WP_001563708.1 | hypothetical protein | - |
| FE985_RS25900 (113099) | 113099..113482 | + | 384 | WP_024191435.1 | fluoride efflux transporter CrcB | - |
| FE985_RS25905 (113862) | 113862..115055 | - | 1194 | WP_123677368.1 | MFS transporter | - |
| FE985_RS25910 (115191) | 115191..116915 | + | 1725 | WP_000602863.1 | NIS family aerobactin synthetase IucA | - |
| FE985_RS25915 (116916) | 116916..117863 | + | 948 | WP_000011908.1 | N(6)-hydroxylysine O-acetyltransferase IucB | - |
| FE985_RS25920 (117863) | 117863..119605 | + | 1743 | WP_001015721.1 | NIS family aerobactin synthetase IucC | - |
| FE985_RS25925 (119602) | 119602..120935 | + | 1334 | Protein_143 | NADPH-dependent L-lysine N(6)-monooxygenase IucD | - |
| FE985_RS25930 (120961) | 120961..123162 | + | 2202 | WP_000973519.1 | ferric aerobactin receptor IutA | - |
| FE985_RS25935 (123687) | 123687..124384 | + | 698 | WP_103215986.1 | IS1-like element IS1A family transposase | - |
| FE985_RS25940 (124563) | 124563..125076 | - | 514 | Protein_146 | DUF4113 domain-containing protein | - |
| FE985_RS25945 (125137) | 125137..125241 | - | 105 | Protein_147 | AAA family ATPase | - |
| FE985_RS25950 (125243) | 125243..125566 | - | 324 | Protein_148 | helix-turn-helix domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|