MGE detailed information
MGE type: Prophage MGE length: 53155 bp
Accession: NZ_AP023224 Location: 2058795..2111949 Organism: Escherichia coli strain YJ1 Replicon: chromosome
Accession: NZ_AP023224 Location: 2058795..2111949 Organism: Escherichia coli strain YJ1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HXS59_RS09860 () | 2055027..2055584 | + | 558 | WP_023147813.1 | hypothetical protein | - |
| HXS59_RS09865 () | 2055585..2055863 | + | 279 | WP_001753400.1 | hypothetical protein | - |
| HXS59_RS09870 () | 2055863..2056078 | + | 216 | WP_001681135.1 | hypothetical protein | - |
| HXS59_RS09875 () | 2056075..2056362 | + | 288 | WP_000805963.1 | HNH endonuclease | - |
| HXS59_RS09880 () | 2056518..2056841 | + | 324 | WP_001678977.1 | hypothetical protein | - |
| HXS59_RS09885 () | 2057380..2058090 | + | 711 | WP_001681134.1 | hypothetical protein | - |
| HXS59_RS09890 () | 2058099..2058407 | + | 309 | WP_001678975.1 | hypothetical protein | - |
| HXS59_RS09895 () | 2058433..2058636 | + | 204 | WP_001678974.1 | hypothetical protein | - |
| HXS59_RS09900 () | 2058795..2060528 | + | 1734 | Protein_1933 | tape measure protein | - |
| HXS59_RS09910 () | 2061859..2062179 | + | 321 | Protein_1935 | phage tail tape measure protein | - |
| HXS59_RS09915 () | 2062337..2063110 | + | 774 | WP_001678972.1 | hypothetical protein | - |
| HXS59_RS09920 () | 2063768..2065310 | + | 1543 | Protein_1937 | IS21 family transposase ISEc12 | Transposase |
| HXS59_RS09925 () | 2065325..2066071 | + | 747 | WP_053906593.1 | IS21 family transposase ISEc12 | Transposase |
| HXS59_RS09930 () | 2066156..2067235 | - | 1080 | Protein_1939 | Putative sialic acid transporter ; Integrase | Integrase |
| HXS59_RS09935 () | 2067288..2067782 | - | 495 | WP_000639268.1 | DUF72 domain-containing protein | - |
| HXS59_RS09940 () | 2067779..2068345 | - | 567 | WP_000891618.1 | hydrolase | - |
| HXS59_RS09945 () | 2068655..2070427 | + | 1773 | WP_001258662.1 | aspartate--tRNA ligase | - |
| HXS59_RS09950 () | 2070545..2070997 | + | 453 | WP_001443602.1 | dihydroneopterin triphosphate diphosphatase | - |
| HXS59_RS09955 () | 2071026..2071766 | + | 741 | WP_000907248.1 | Alkanesulfonate monooxygenase | VF |
| HXS59_RS09960 () | 2071801..2072322 | + | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| HXS59_RS09965 () | 2072324..2072926 | - | 603 | WP_001024930.1 | YebB family permuted papain-like enzyme | - |
| HXS59_RS09970 () | 2072997..2073062 | + | 66 | WP_001386853.1 | stress response small protein YobI | - |
| HXS59_RS09975 () | 2073201..2073812 | + | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| HXS59_RS09980 () | 2073821..2074831 | + | 1011 | WP_000568519.1 | Holliday junction branch migration DNA helicase RuvB | - |
| HXS59_RS09985 () | 2074978..2075763 | - | 786 | WP_000571479.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| HXS59_RS09990 () | 2075760..2076515 | - | 756 | WP_000202996.1 | Vitamin B12 transporter BtuB | VF |
| HXS59_RS09995 () | 2076594..2077526 | + | 933 | WP_001342995.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| HXS59_RS10000 () | 2077542..2078864 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| HXS59_RS10005 () | 2078984..2079955 | + | 972 | WP_000448381.1 | Vitamin B12 import system permease protein BtuC | VF |
| HXS59_RS10010 () | 2080086..2081528 | - | 1443 | WP_000091176.1 | pyruvate kinase | - |
| HXS59_RS10015 () | 2081656..2082525 | - | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| HXS59_RS10020 () | 2082863..2084338 | + | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| HXS59_RS10025 () | 2084573..2086384 | + | 1812 | WP_060621242.1 | phosphogluconate dehydratase | - |
| HXS59_RS10030 () | 2086421..2087062 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| HXS59_RS10035 () | 2087118..2088296 | - | 1179 | WP_000173475.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| HXS59_RS10040 () | 2088430..2088720 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| HXS59_RS10045 () | 2088787..2089143 | + | 357 | WP_001295500.1 | protein YebF | - |
| HXS59_RS10050 () | 2089470..2090129 | + | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| HXS59_RS10055 () | 2090338..2092398 | + | 2061 | WP_000936951.1 | oligopeptidase B | - |
| HXS59_RS10060 () | 2092395..2093057 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| HXS59_RS10065 () | 2093081..2093737 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| HXS59_RS10070 () | 2093839..2094069 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| HXS59_RS10075 () | 2094208..2094582 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| HXS59_RS10080 () | 2094586..2095458 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| HXS59_RS10085 () | 2095471..2095812 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - () | 2095840..2096111 | - | 272 | - | - | Antitoxin Detail |
| - () | 2095970..2096073 | + | 104 | - | - | Toxin Detail |
| HXS59_RS10090 () | 2096208..2096864 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| HXS59_RS10095 () | 2096865..2097056 | - | 192 | WP_001296140.1 | YebW family protein | - |
| HXS59_RS10100 () | 2097161..2097397 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| HXS59_RS10105 () | 2097515..2098954 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HXS59_RS10110 () | 2099034..2101667 | - | 2634 | WP_001356288.1 | hypothetical protein | VF |
| HXS59_RS10115 () | 2101636..2102919 | - | 1284 | WP_001207282.1 | membrane integrity lipid transport subunit YebS | - |
| HXS59_RS10120 () | 2103049..2103546 | + | 498 | WP_001373833.1 | L-methionine (R)-S-oxide reductase | - |
| HXS59_RS10125 () | 2103643..2104341 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| HXS59_RS10130 () | 2104361..2106409 | + | 2049 | WP_001315679.1 | carboxy terminal-processing peptidase | - |
| HXS59_RS10135 () | 2106601..2107482 | + | 882 | WP_000984517.1 | protease HtpX | - |
| HXS59_RS10140 () | 2107528..2108901 | - | 1374 | WP_001127216.1 | MFS transporter | - |
| HXS59_RS10145 () | 2109078..2109869 | + | 792 | WP_001262192.1 | DNA-binding transcriptional regulator KdgR | - |
| HXS59_RS10150 () | 2110012..2110251 | - | 240 | WP_001211011.1 | hypothetical protein | - |
| HXS59_RS10155 () | 2110410..2110553 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| HXS59_RS10160 () | 2110628..2110915 | + | 288 | WP_001006866.1 | YebO family protein | - |
| HXS59_RS10165 () | 2111584..2111727 | + | 144 | WP_001295496.1 | YobF family protein | - |
| HXS59_RS10170 () | 2111740..2111949 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| HXS59_RS10175 () | 2112115..2112924 | + | 810 | WP_000010115.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| HXS59_RS10180 () | 2112921..2113487 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| HXS59_RS10185 () | 2113916..2114374 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| HXS59_RS10190 () | 2114429..2115280 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| HXS59_RS10195 () | 2115293..2116093 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|