MGE detailed information
MGE type: Conjugative plasmid MGE length: 87852 bp
Accession: NZ_AP021916 Location: 1..87852 Organism: Escherichia coli strain WP2-W18-CRE-03 Replicon: plasmid pWP2-W18-CRE-03_2
Accession: NZ_AP021916 Location: 1..87852 Organism: Escherichia coli strain WP2-W18-CRE-03 Replicon: plasmid pWP2-W18-CRE-03_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7Q98_RS23620 () | 95..379 | + | 285 | WP_001178087.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| H7Q98_RS23625 () | 379..654 | + | 276 | WP_000421259.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| H7Q98_RS23630 () | 760..1041 | + | 282 | WP_001105066.1 | hypothetical protein | - |
| H7Q98_RS23635 () | 1233..1499 | - | 267 | WP_000627832.1 | hypothetical protein | - |
| H7Q98_RS23640 () | 1499..1993 | - | 495 | WP_015058884.1 | hypothetical protein | - |
| H7Q98_RS23645 () | 2049..2651 | - | 603 | WP_000517694.1 | hypothetical protein | - |
| H7Q98_RS23650 () | 3005..4351 | + | 1347 | WP_001132032.1 | hypothetical protein | - |
| H7Q98_RS23655 () | 4630..6510 | + | 1881 | WP_001582575.1 | colicin 1A | - |
| H7Q98_RS23660 () | 6532..6867 | - | 336 | WP_001080734.1 | colicin 1A immunity protein | - |
| H7Q98_RS23665 () | 6996..7343 | + | 348 | WP_001582578.1 | hypothetical protein | - |
| H7Q98_RS23670 () | 7363..7953 | - | 591 | WP_000194572.1 | hypothetical protein | - |
| H7Q98_RS23675 () | 7953..8207 | - | 255 | WP_000343103.1 | hypothetical protein | - |
| H7Q98_RS23680 () | 8776..9189 | + | 414 | WP_001401590.1 | hypothetical protein | - |
| H7Q98_RS23685 () | 9191..9970 | + | 780 | WP_052971527.1 | site-specific integrase | - |
| H7Q98_RS23690 () | 10150..10794 | + | 645 | WP_001144036.1 | ParA family protein | - |
| H7Q98_RS23695 () | 10881..11189 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| H7Q98_RS23700 () | 11603..12583 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| H7Q98_RS23705 () | 12576..12992 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| H7Q98_RS23710 () | 12994..14268 | - | 1275 | WP_015058887.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| H7Q98_RS23715 () | 14268..14705 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| H7Q98_RS23720 () | 14702..14950 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| H7Q98_RS23725 () | 15368..16270 | + | 903 | WP_023156105.1 | DUF1281 domain-containing protein | - |
| H7Q98_RS23730 () | 16267..16578 | + | 312 | WP_032317461.1 | hypothetical protein | - |
| H7Q98_RS23735 () | 16654..17337 | + | 684 | WP_000086185.1 | DNA methylase | - |
| H7Q98_RS23740 () | 17338..17559 | + | 222 | WP_001104887.1 | hypothetical protein | - |
| H7Q98_RS23745 () | 17571..18005 | + | 435 | WP_021547622.1 | DUF1380 family protein | - |
| H7Q98_RS23750 () | 18050..18820 | + | 771 | WP_001006225.1 | hypothetical protein | - |
| H7Q98_RS23755 () | 19355..19657 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| H7Q98_RS23760 () | 19704..20126 | + | 423 | WP_000271744.1 | DUF1380 family protein | - |
| H7Q98_RS23765 () | 20123..20314 | + | 192 | WP_001027495.1 | hypothetical protein | - |
| H7Q98_RS23770 () | 20385..20699 | + | 315 | WP_001434357.1 | hypothetical protein | - |
| H7Q98_RS23775 () | 21083..21610 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| H7Q98_RS23780 () | 21668..21901 | + | 234 | WP_025769126.1 | DUF905 domain-containing protein | - |
| H7Q98_RS23785 () | 21960..23918 | + | 1959 | WP_101969592.1 | ParB/RepB/Spo0J family partition protein | - |
| H7Q98_RS23790 () | 23973..24407 | + | 435 | WP_001578018.1 | conjugation system SOS inhibitor PsiB | - |
| H7Q98_RS23795 () | 24404..25123 | + | 720 | WP_021513992.1 | plasmid SOS inhibition protein A | - |
| H7Q98_RS23800 () | 25120..25716 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| H7Q98_RS23805 () | 26179..26679 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| H7Q98_RS23810 () | 27408..27842 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| H7Q98_RS23815 () | 27934..28200 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| H7Q98_RS23820 () | 28265..29167 | + | 903 | WP_001690644.1 | Recombination-promoting nuclease RpnA | VF |
| H7Q98_RS23825 () | 29167..29400 | + | 234 | WP_171545351.1 | hypothetical protein | - |
| H7Q98_RS23830 () | 29431..29682 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| H7Q98_RS23835 () | 30262..31110 | + | 849 | WP_021513954.1 | DUF4942 domain-containing protein | - |
| H7Q98_RS23840 () | 31196..31531 | - | 336 | WP_000157095.1 | molybdopterin-guanine dinucleotide biosynthesis protein MobC | - |
| H7Q98_RS23845 () | 31765..32097 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| H7Q98_RS23850 () | 32108..34807 | + | 2700 | WP_052971501.1 | Protein TraI | Relaxase |
| H7Q98_RS23855 () | 34844..37135 | - | 2292 | WP_101969591.1 | conjugal transfer protein TrbC | - |
| H7Q98_RS23860 () | 37128..38198 | - | 1071 | WP_000151583.1 | IncI1-type conjugal transfer protein TrbB | - |
| H7Q98_RS23865 () | 38217..39425 | - | 1209 | WP_001383960.1 | IncI1-type conjugal transfer protein TrbA | - |
| H7Q98_RS23870 () | 39643..40629 | - | 987 | WP_001257838.1 | hypothetical protein | - |
| - () | 40790..40847 | - | 58 | NuclAT_0 | - | - |
| - () | 40790..40847 | - | 58 | NuclAT_0 | - | - |
| - () | 40790..40847 | - | 58 | NuclAT_0 | - | - |
| - () | 40790..40847 | - | 58 | NuclAT_0 | - | - |
| H7Q98_RS23875 () | 40902..41054 | + | 153 | WP_001331364.1 | Hok/Gef family protein | Toxin Detail |
| H7Q98_RS23880 () | 41126..41377 | - | 252 | WP_001291964.1 | hypothetical protein | - |
| H7Q98_RS23885 () | 42036..42212 | - | 177 | WP_001054900.1 | hypothetical protein | - |
| H7Q98_RS23890 () | 42544..42753 | + | 210 | WP_000062602.1 | HEAT repeat domain-containing protein | - |
| H7Q98_RS23895 () | 42825..43487 | - | 663 | WP_000644792.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| H7Q98_RS23900 () | 43552..45720 | - | 2169 | WP_000698366.1 | DotA/TraY family protein | - |
| H7Q98_RS23905 () | 45817..46401 | - | 585 | WP_001037996.1 | IncI1-type conjugal transfer protein TraX | - |
| H7Q98_RS23910 () | 46430..47632 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| H7Q98_RS23915 () | 47599..48213 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| H7Q98_RS23920 () | 48213..51257 | - | 3045 | WP_106108247.1 | IncI1-type conjugal transfer protein TraU | - |
| H7Q98_RS23925 () | 51347..52147 | - | 801 | WP_001164792.1 | IncI1-type conjugal transfer protein TraT | - |
| H7Q98_RS23930 () | 52131..52319 | - | 189 | WP_001277255.1 | putative conjugal transfer protein TraS | - |
| H7Q98_RS23935 () | 52383..52787 | - | 405 | WP_000086960.1 | IncI1-type conjugal transfer protein TraR | - |
| H7Q98_RS23940 () | 52838..53365 | - | 528 | WP_001055569.1 | conjugal transfer protein TraQ | - |
| H7Q98_RS23945 () | 53365..54069 | - | 705 | WP_023155244.1 | IncI1-type conjugal transfer protein TraP | - |
| H7Q98_RS23950 () | 54069..55358 | - | 1290 | WP_001271994.1 | conjugal transfer protein TraO | - |
| H7Q98_RS23955 () | 55361..56344 | - | 984 | WP_021513963.1 | hypothetical protein | VF |
| H7Q98_RS23960 () | 56355..57047 | - | 693 | WP_000138552.1 | DotI/IcmL family type IV secretion protein | - |
| H7Q98_RS23965 () | 57044..57391 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| H7Q98_RS23970 () | 57409..61176 | - | 3768 | WP_077134477.1 | DNA primase | - |
| H7Q98_RS23975 () | 61266..61817 | - | 552 | WP_000014584.1 | Phospholipase D | VF |
| H7Q98_RS23980 () | 61832..62122 | - | 291 | WP_001299214.1 | hypothetical protein | - |
| H7Q98_RS23985 () | 62119..63267 | - | 1149 | WP_001024976.1 | putative protein YggR | VF |
| H7Q98_RS23990 () | 63264..64082 | - | 819 | WP_101969589.1 | hypothetical protein | VF |
| H7Q98_RS23995 () | 64079..64537 | - | 459 | WP_001079808.1 | hypothetical protein | VF |
| H7Q98_RS24000 () | 64932..65516 | - | 585 | WP_000977520.1 | histidine phosphatase family protein | - |
| H7Q98_RS24005 () | 65576..66778 | - | 1203 | WP_000976357.1 | conjugal transfer protein TraF | - |
| H7Q98_RS24010 () | 66864..67688 | - | 825 | WP_015058912.1 | conjugal transfer protein TraE | - |
| H7Q98_RS24015 () | 67839..68993 | - | 1155 | WP_001139955.1 | integrase | - |
| H7Q98_RS24020 () | 70432..70629 | + | 198 | WP_032159596.1 | hypothetical protein | - |
| H7Q98_RS24025 () | 70626..72062 | - | 1437 | WP_015058913.1 | hypothetical protein | VF |
| H7Q98_RS24030 () | 72050..72706 | - | 657 | WP_001193551.1 | hypothetical protein | VF |
| H7Q98_RS24035 () | 72691..73251 | - | 561 | WP_000014005.1 | hypothetical protein | VF |
| H7Q98_RS24040 () | 73261..73875 | - | 615 | WP_000908228.1 | hypothetical protein | VF |
| H7Q98_RS24045 () | 73892..74977 | - | 1086 | WP_001208803.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| H7Q98_RS24050 () | 74990..76543 | - | 1554 | WP_000362204.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| H7Q98_RS24055 () | 76554..77006 | - | 453 | WP_001247333.1 | hypothetical protein | VF |
| H7Q98_RS24060 () | 76993..78288 | - | 1296 | WP_000752776.1 | type 4b pilus protein PilO2 | - |
| H7Q98_RS24065 () | 78281..79963 | - | 1683 | WP_000748143.1 | Outer membrane lipoprotein BfpB | VF |
| H7Q98_RS24070 () | 79977..80414 | - | 438 | WP_000539811.1 | hypothetical protein | VF |
| H7Q98_RS24075 () | 80414..81481 | - | 1068 | WP_021513968.1 | hypothetical protein | VF |
| H7Q98_RS24080 () | 82233..82487 | - | 255 | WP_001136187.1 | PilI type IV pilus biogenesis protein | - |
| H7Q98_RS24085 () | 82659..83342 | - | 684 | WP_000213863.1 | hypothetical protein | - |
| H7Q98_RS24090 () | 83596..84129 | - | 534 | WP_001372168.1 | transcription termination factor NusG | - |
| H7Q98_RS24095 () | 84571..84858 | - | 288 | WP_000074849.1 | conjugal transfer protein TraA | - |
| H7Q98_RS24100 () | 84776..85039 | - | 264 | WP_001324596.1 | ash family protein | - |
| H7Q98_RS24105 () | 86012..87043 | + | 1032 | WP_000907852.1 | replication initiation protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|