MGE detailed information
MGE type: Prophage MGE length: 62593 bp
Accession: NZ_AP021893 Location: 2525917..2588509 Organism: Escherichia coli strain 2018-06-4CC Replicon: chromosome
Accession: NZ_AP021893 Location: 2525917..2588509 Organism: Escherichia coli strain 2018-06-4CC Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HRR20_RS12020 () | 2522698..2523831 | + | 1134 | WP_000837924.1 | porin OmpN | - |
| HRR20_RS12025 () | 2523972..2524406 | + | 435 | WP_001300461.1 | universal stress protein UspF | - |
| HRR20_RS12030 () | 2524672..2524845 | - | 174 | WP_001157925.1 | hypothetical protein | - |
| HRR20_RS12035 () | 2525185..2525298 | + | 114 | WP_120795384.1 | hypothetical protein | - |
| HRR20_RS12040 () | 2525367..2525600 | + | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| HRR20_RS12045 () | 2525917..2526507 | + | 591 | WP_000078178.1 | recombinase family protein | - |
| HRR20_RS12050 () | 2526605..2527180 | - | 576 | WP_001351719.1 | tail fiber assembly protein | - |
| HRR20_RS12055 () | 2527180..2530407 | - | 3228 | WP_172408814.1 | prophage tail fiber N-terminal domain-containing protein | - |
| HRR20_RS12060 () | 2530472..2531071 | - | 600 | WP_001233121.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| HRR20_RS12065 () | 2531139..2534618 | - | 3480 | WP_172408815.1 | host specificity protein J | - |
| HRR20_RS12070 () | 2534679..2535281 | - | 603 | WP_000090943.1 | tail assembly protein | - |
| HRR20_RS12075 () | 2535218..2535961 | - | 744 | WP_001351716.1 | C40 family peptidase | - |
| HRR20_RS12080 () | 2535967..2536665 | - | 699 | WP_001152432.1 | phage minor tail protein L | - |
| HRR20_RS12085 () | 2536665..2537003 | - | 339 | WP_000024051.1 | phage tail protein | - |
| HRR20_RS12090 () | 2536996..2540229 | - | 3234 | WP_172408816.1 | phage tail tape measure protein | - |
| HRR20_RS12095 () | 2540703..2541062 | - | 360 | WP_012565075.1 | hypothetical protein | - |
| HRR20_RS12100 () | 2541213..2542175 | - | 963 | WP_000094292.1 | hypothetical protein | - |
| HRR20_RS12105 () | 2542202..2542594 | - | 393 | WP_000144678.1 | hypothetical protein | - |
| HRR20_RS12110 () | 2542591..2542971 | - | 381 | WP_001029815.1 | hypothetical protein | - |
| HRR20_RS12115 () | 2542972..2543355 | - | 384 | WP_000524260.1 | hypothetical protein | - |
| HRR20_RS12120 () | 2543355..2543749 | - | 395 | Protein_2375 | protein singed | - |
| HRR20_RS12125 () | 2543753..2543929 | - | 177 | WP_000908084.1 | hypothetical protein | - |
| HRR20_RS12130 () | 2543972..2545111 | - | 1140 | WP_063856380.1 | P22 coat - protein 5 family protein | - |
| HRR20_RS12135 () | 2545210..2545974 | - | 765 | WP_000770042.1 | hypothetical protein | - |
| HRR20_RS12140 () | 2546079..2547191 | - | 1113 | WP_001351715.1 | hypothetical protein | - |
| HRR20_RS12145 () | 2547175..2548581 | - | 1407 | WP_000763704.1 | DUF4055 domain-containing protein | - |
| HRR20_RS12150 () | 2548584..2549885 | - | 1302 | WP_000625348.1 | terminase family protein | - |
| HRR20_RS12155 () | 2549866..2550960 | - | 1095 | WP_000089447.1 | terminase small subunit | - |
| HRR20_RS12160 () | 2550964..2551215 | - | 252 | WP_000613571.1 | hypothetical protein | - |
| HRR20_RS12165 () | 2551151..2552083 | - | 933 | WP_001204037.1 | hypothetical protein | - |
| HRR20_RS12170 () | 2552076..2552867 | - | 792 | WP_001291094.1 | ParB/Srx family N-terminal domain-containing protein | - |
| HRR20_RS12175 () | 2553005..2554462 | - | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| HRR20_RS12180 () | 2554600..2554728 | - | 129 | WP_157915680.1 | lysis system i-spanin subunit Rz | - |
| HRR20_RS12185 () | 2554694..2555065 | - | 372 | WP_172408817.1 | lysis protein | - |
| HRR20_RS12190 () | 2555062..2555559 | - | 498 | WP_001351713.1 | lysozyme RrrD | - |
| HRR20_RS12195 () | 2555559..2555774 | - | 216 | WP_000839565.1 | phage lysis protein EssD | - |
| HRR20_RS12200 () | 2556026..2556400 | - | 375 | WP_001348108.1 | hypothetical protein | - |
| HRR20_RS12205 () | 2556572..2557000 | - | 429 | WP_000506936.1 | cell envelope integrity protein TolA | - |
| HRR20_RS12210 () | 2558045..2558587 | - | 543 | WP_152922190.1 | DUF1133 family protein | - |
| HRR20_RS12215 () | 2558584..2558874 | - | 291 | WP_000247763.1 | DUF1364 domain-containing protein | - |
| HRR20_RS12220 () | 2558874..2559473 | - | 600 | WP_025670565.1 | DUF1367 family protein | - |
| HRR20_RS12225 () | 2559942..2560097 | - | 156 | WP_000813269.1 | type I toxin-antitoxin system toxin HokD | - |
| HRR20_RS12230 () | 2560169..2560456 | - | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| HRR20_RS12235 () | 2560456..2560695 | - | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| HRR20_RS12240 () | 2560720..2561025 | + | 306 | WP_172408818.1 | hypothetical protein | - |
| HRR20_RS12245 () | 2561228..2561560 | + | 333 | WP_001349760.1 | FlxA-like family protein | - |
| HRR20_RS12250 () | 2561997..2563337 | - | 1341 | WP_000589013.1 | ISNCY family transposase | - |
| HRR20_RS12260 () | 2564134..2565333 | + | 1200 | WP_001117227.1 | MFS transporter | - |
| HRR20_RS12265 () | 2565345..2566037 | + | 693 | WP_000957772.1 | gamma-glutamylcyclotransferase | - |
| HRR20_RS12270 () | 2566034..2566915 | + | 882 | WP_000019009.1 | LysR family transcriptional regulator | - |
| HRR20_RS12275 () | 2567046..2568323 | - | 1278 | WP_000625667.1 | DUF2254 domain-containing protein | - |
| HRR20_RS12280 () | 2568387..2570384 | - | 1998 | WP_001676522.1 | choline BCCT transporter BetT | - |
| HRR20_RS12285 () | 2570725..2571147 | - | 423 | WP_001151151.1 | DUF977 family protein | - |
| HRR20_RS12290 () | 2571188..2572258 | - | 1071 | WP_069722905.1 | phage replisome organizer | - |
| HRR20_RS12295 () | 2572330..2572755 | - | 426 | WP_000693836.1 | Rha family transcriptional regulator | - |
| HRR20_RS12300 () | 2572739..2573020 | - | 282 | WP_000391949.1 | helix-turn-helix domain-containing protein | - |
| HRR20_RS12305 () | 2573121..2573540 | + | 420 | WP_000362155.1 | hypothetical protein | - |
| HRR20_RS12310 () | 2573939..2574094 | + | 156 | WP_001169151.1 | YdaF family protein | - |
| HRR20_RS12315 () | 2574091..2574579 | - | 489 | WP_063856386.1 | superinfection exclusion B family protein | - |
| HRR20_RS12320 () | 2575021..2575242 | + | 222 | WP_000560223.1 | killing protein KilR | - |
| HRR20_RS12325 () | 2575242..2575412 | + | 171 | WP_001352098.1 | conserved protein, Rac prophage | - |
| HRR20_RS12330 () | 2575487..2575762 | + | 276 | WP_000632297.1 | protein RacC | - |
| HRR20_RS12335 () | 2575864..2578464 | + | 2601 | WP_024232464.1 | exodeoxyribonuclease VIII | - |
| HRR20_RS12340 () | 2578457..2579266 | + | 810 | WP_000166319.1 | recombination protein RecT | - |
| HRR20_RS12345 () | 2579323..2579517 | + | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| HRR20_RS12350 () | 2579510..2579719 | + | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| - () | 2579516..2579694 | - | 179 | NuclAT_0 | - | - |
| - () | 2579516..2579694 | - | 179 | NuclAT_0 | - | - |
| - () | 2579516..2579694 | - | 179 | NuclAT_0 | - | - |
| - () | 2579516..2579694 | - | 179 | NuclAT_0 | - | - |
| HRR20_RS12355 () | 2579798..2580013 | + | 216 | WP_000079604.1 | excisionase XisR | - |
| HRR20_RS12360 () | 2580015..2581250 | + | 1236 | WP_000040852.1 | site-specific integrase | - |
| HRR20_RS12365 () | 2581302..2582237 | + | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| HRR20_RS12370 () | 2582366..2583739 | - | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| HRR20_RS12375 () | 2584217..2585200 | - | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| HRR20_RS12380 () | 2585455..2586687 | + | 1233 | WP_000628058.1 | diguanylate cyclase DgcM | - |
| HRR20_RS12385 () | 2586708..2587271 | - | 564 | WP_001046829.1 | DNA endonuclease SmrA | - |
| HRR20_RS12390 () | 2587601..2588509 | - | 909 | WP_000885454.1 | LysR family transcriptional regulator | - |
| HRR20_RS12395 () | 2588685..2589995 | + | 1311 | WP_172408819.1 | p-aminobenzoyl-glutamate hydrolase subunit AbgA | - |
| HRR20_RS12400 () | 2589995..2591440 | + | 1446 | WP_001156412.1 | p-aminobenzoyl-glutamate hydrolase subunit AbgB | - |
| HRR20_RS12405 () | 2591474..2593000 | + | 1527 | WP_074185461.1 | p-aminobenzoyl-glutamate transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|