MGE detailed information
MGE type: Conjugative plasmid MGE length: 100021 bp
Accession: NC_011419 Location: 1..100021 Organism: Escherichia coli SE11 Replicon: plasmid pSE11-1
Accession: NC_011419 Location: 1..100021 Organism: Escherichia coli SE11 Replicon: plasmid pSE11-1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECSE_RS24430 () | 46..1077 | + | 1032 | WP_000907860.1 | replication initiation protein | - |
| ECSE_RS24435 () | 1981..2265 | + | 285 | WP_001178087.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| ECSE_RS24440 () | 2265..2540 | + | 276 | WP_000421267.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| ECSE_RS24445 () | 2646..2933 | + | 288 | WP_001105073.1 | hypothetical protein | - |
| ECSE_RS28960 () | 3124..3390 | - | 267 | WP_000627834.1 | hypothetical protein | - |
| ECSE_RS24455 () | 3390..3884 | - | 495 | WP_001350009.1 | hypothetical protein | - |
| ECSE_RS24460 () | 3940..4281 | - | 342 | WP_000411278.1 | hypothetical protein | - |
| ECSE_RS24465 () | 4357..5061 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| ECSE_RS28815 () | 5108..5257 | - | 150 | WP_158299169.1 | hypothetical protein | - |
| ECSE_RS27835 () | 5977..6516 | - | 540 | Protein_9 | helix-turn-helix transcriptional regulator | - |
| ECSE_RS24480 () | 6503..7162 | - | 660 | WP_001038045.1 | tetracycline resistance transcriptional repressor TetR(C) | - |
| ECSE_RS24485 () | 7255..8445 | + | 1191 | WP_000841446.1 | tetracycline efflux MFS transporter Tet(C) | - |
| ECSE_RS27840 () | 8349..8687 | + | 339 | WP_002310911.1 | hypothetical protein | - |
| ECSE_RS27845 () | 8684..8869 | - | 186 | WP_071533317.1 | hypothetical protein | - |
| ECSE_RS28875 () | 8895..9173 | + | 279 | WP_000015696.1 | tyrosine-type recombinase/integrase | - |
| ECSE_RS24505 () | 9531..10235 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| ECSE_RS24510 () | 10272..10544 | - | 273 | WP_012565233.1 | truncated YafB protein | - |
| ECSE_RS24515 () | 10898..12244 | + | 1347 | WP_001132028.1 | hypothetical protein | - |
| ECSE_RS24520 () | 12522..14402 | + | 1881 | WP_001283333.1 | colicin | - |
| ECSE_RS24525 () | 14424..14759 | - | 336 | WP_001080730.1 | colicin 1A immunity protein | - |
| ECSE_RS24530 () | 14888..15235 | + | 348 | WP_000142447.1 | hypothetical protein | - |
| ECSE_RS24535 () | 15255..15845 | - | 591 | WP_000194560.1 | hypothetical protein | - |
| ECSE_RS24540 () | 15845..16108 | - | 264 | WP_000371886.1 | hypothetical protein | - |
| ECSE_RS24545 () | 16382..16873 | + | 492 | WP_000528930.1 | hypothetical protein | - |
| ECSE_RS24550 () | 16885..17643 | + | 759 | WP_000494510.1 | hypothetical protein | - |
| ECSE_RS24555 () | 17865..19457 | + | 1593 | WP_001350003.1 | hypothetical protein | - |
| ECSE_RS24560 () | 19492..20616 | + | 1125 | WP_000386705.1 | DUF4238 domain-containing protein | - |
| ECSE_RS24565 () | 20616..20906 | + | 291 | WP_000648897.1 | hypothetical protein | - |
| ECSE_RS24575 () | 21479..22480 | + | 1002 | WP_000785695.1 | DUF4238 domain-containing protein | - |
| ECSE_RS24580 () | 22654..22998 | - | 345 | WP_000792769.1 | hypothetical protein | - |
| ECSE_RS24590 () | 23496..23750 | - | 255 | WP_000678528.1 | hypothetical protein | - |
| ECSE_RS24595 () | 23800..24726 | - | 927 | WP_001290414.1 | hypothetical protein | - |
| ECSE_RS24600 () | 25243..25593 | + | 351 | WP_000493398.1 | hypothetical protein | - |
| ECSE_RS24605 () | 25652..26473 | + | 822 | WP_001316850.1 | hypothetical protein | - |
| ECSE_RS24610 () | 26473..27252 | + | 780 | WP_000147282.1 | site-specific integrase | - |
| ECSE_RS24615 () | 27432..28076 | + | 645 | WP_001144036.1 | ParA family protein | - |
| ECSE_RS24620 () | 28163..28471 | + | 309 | WP_000030199.1 | hypothetical protein | - |
| ECSE_RS24625 () | 28885..29865 | + | 981 | WP_000688514.1 | plasmid segregation protein ParM | - |
| ECSE_RS24630 () | 29858..30274 | + | 417 | WP_001278818.1 | plasmid partitioning/stability family protein | - |
| ECSE_RS24635 () | 30276..31550 | - | 1275 | WP_000457498.1 | Y-family DNA polymerase | - |
| ECSE_RS24640 () | 31550..31987 | - | 438 | WP_000109071.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| ECSE_RS24645 () | 31984..32232 | - | 249 | WP_000618110.1 | DinI-like family protein | - |
| ECSE_RS24650 () | 32650..33552 | + | 903 | WP_173072220.1 | DUF1281 domain-containing protein | - |
| ECSE_RS24655 () | 33549..33860 | + | 312 | WP_012565240.1 | hypothetical protein | - |
| ECSE_RS24660 () | 33937..34620 | + | 684 | WP_000086157.1 | DNA methylase | - |
| ECSE_RS24665 () | 34621..34842 | + | 222 | WP_001104867.1 | hypothetical protein | - |
| ECSE_RS24670 () | 34856..35290 | + | 435 | WP_000274436.1 | DUF1380 family protein | - |
| ECSE_RS29030 () | 35336..36112 | + | 777 | WP_001005029.1 | hypothetical protein | - |
| ECSE_RS24685 () | 36652..36954 | + | 303 | WP_014653258.1 | antirestriction protein | - |
| ECSE_RS24690 () | 37001..37423 | + | 423 | WP_000271752.1 | DUF1380 family protein | - |
| ECSE_RS24695 () | 37420..37611 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| ECSE_RS28825 () | 37683..37997 | + | 315 | WP_012565242.1 | hypothetical protein | - |
| ECSE_RS28650 () | 38178..38342 | + | 165 | Protein_52 | single-stranded DNA-binding protein | - |
| ECSE_RS28655 () | 38343..38609 | + | 267 | Protein_53 | single-stranded DNA-binding protein | - |
| ECSE_RS24710 () | 38666..38899 | + | 234 | WP_001042948.1 | DUF905 domain-containing protein | - |
| ECSE_RS24715 () | 38961..40919 | + | 1959 | WP_000117796.1 | ParB/RepB/Spo0J family partition protein | - |
| ECSE_RS24720 () | 40974..41408 | + | 435 | WP_000845898.1 | conjugation system SOS inhibitor PsiB | - |
| ECSE_RS24725 () | 41405..42124 | + | 720 | WP_001276264.1 | plasmid SOS inhibition protein A | - |
| ECSE_RS24730 () | 42121..42717 | + | 597 | WP_000978012.1 | hypothetical protein | - |
| ECSE_RS24740 () | 43180..43680 | + | 501 | WP_000117622.1 | antirestriction protein ArdA | - |
| ECSE_RS24745 () | 44409..44843 | + | 435 | WP_000218858.1 | hypothetical protein | - |
| ECSE_RS24750 () | 44937..45203 | + | 267 | WP_001247862.1 | hypothetical protein | - |
| ECSE_RS24755 () | 45268..46182 | + | 915 | WP_000038401.1 | Recombination-promoting nuclease RpnA | VF |
| ECSE_RS27895 () | 46182..46403 | + | 222 | WP_001604501.1 | hypothetical protein | - |
| ECSE_RS24760 () | 46434..46685 | - | 252 | WP_000148292.1 | hypothetical protein | - |
| ECSE_RS28965 () | 46719..46916 | - | 198 | WP_001161111.1 | hypothetical protein | - |
| ECSE_RS24770 () | 47261..48109 | + | 849 | WP_001077051.1 | DUF4942 domain-containing protein | - |
| ECSE_RS24775 () | 48195..48530 | - | 336 | WP_000157100.1 | hypothetical protein | - |
| ECSE_RS24780 () | 48763..49095 | + | 333 | WP_001283947.1 | IncI1-type relaxosome accessory protein NikA | - |
| ECSE_RS24785 () | 49106..51805 | + | 2700 | WP_012565247.1 | Protein TraI | Relaxase |
| ECSE_RS24790 () | 51842..54133 | - | 2292 | WP_001289281.1 | hypothetical protein | - |
| ECSE_RS24795 () | 54126..55196 | - | 1071 | WP_000151578.1 | IncI1-type conjugal transfer protein TrbB | - |
| ECSE_RS24800 () | 55215..56423 | - | 1209 | WP_000121273.1 | IncI1-type conjugal transfer protein TrbA | - |
| ECSE_RS24805 () | 56715..56867 | + | 153 | WP_041031393.1 | Hok/Gef family protein | - |
| ECSE_RS24810 () | 56939..57190 | - | 252 | WP_001291962.1 | hypothetical protein | - |
| ECSE_RS28830 () | 57846..58088 | - | 243 | WP_000504400.1 | hypothetical protein | - |
| ECSE_RS24830 () | 58207..58416 | - | 210 | WP_001140543.1 | hemolysin expression modulator Hha | - |
| ECSE_RS24835 () | 58514..59176 | - | 663 | WP_000644796.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| ECSE_RS24840 () | 59247..61415 | - | 2169 | WP_024210469.1 | DotA/TraY family protein | - |
| ECSE_RS24845 () | 61512..62096 | - | 585 | WP_001037988.1 | IncI1-type conjugal transfer protein TraX | - |
| ECSE_RS24850 () | 62125..63327 | - | 1203 | WP_001189156.1 | IncI1-type conjugal transfer protein TraW | - |
| ECSE_RS24855 () | 63294..63908 | - | 615 | WP_000337399.1 | IncI1-type conjugal transfer protein TraV | - |
| ECSE_RS24860 () | 63908..66952 | - | 3045 | WP_001024774.1 | IncI1-type conjugal transfer protein TraU | - |
| ECSE_RS24865 () | 67042..67842 | - | 801 | WP_001164790.1 | IncI1-type conjugal transfer protein TraT | - |
| ECSE_RS24870 () | 67826..68014 | - | 189 | WP_001277251.1 | putative conjugal transfer protein TraS | - |
| ECSE_RS24875 () | 68078..68482 | - | 405 | WP_000086955.1 | conjugal transfer protein TraR | - |
| ECSE_RS24880 () | 68532..69059 | - | 528 | WP_001055572.1 | conjugal transfer protein TraQ | - |
| ECSE_RS24885 () | 69059..69763 | - | 705 | WP_000801922.1 | IncI1-type conjugal transfer protein TraP | - |
| ECSE_RS24890 () | 69763..71052 | - | 1290 | WP_001271991.1 | conjugal transfer protein TraO | - |
| ECSE_RS24895 () | 71055..72038 | - | 984 | WP_001191881.1 | hypothetical protein | VF |
| ECSE_RS24900 () | 72049..72741 | - | 693 | WP_000138548.1 | DotI/IcmL family type IV secretion protein | - |
| ECSE_RS24905 () | 72738..73085 | - | 348 | WP_001055900.1 | conjugal transfer protein | - |
| ECSE_RS24910 () | 73103..76870 | - | 3768 | WP_001141547.1 | hypothetical protein | - |
| ECSE_RS24915 () | 76960..77511 | - | 552 | WP_000014581.1 | Phospholipase D | VF |
| ECSE_RS27905 () | 77526..77816 | - | 291 | WP_001314267.1 | hypothetical protein | - |
| ECSE_RS24920 () | 77813..78961 | - | 1149 | WP_001024975.1 | putative protein YggR | VF |
| ECSE_RS24925 () | 78958..79776 | - | 819 | WP_000646097.1 | hypothetical protein | VF |
| ECSE_RS24930 () | 79773..80231 | - | 459 | WP_001079805.1 | hypothetical protein | VF |
| ECSE_RS24935 () | 80626..81210 | - | 585 | WP_001611722.1 | histidine phosphatase family protein | - |
| ECSE_RS24940 () | 81270..82472 | - | 1203 | WP_000976347.1 | conjugal transfer protein TraF | - |
| ECSE_RS24945 () | 82558..83383 | - | 826 | Protein_100 | conjugal transfer protein TraE | - |
| ECSE_RS27910 () | 83591..83716 | + | 126 | Protein_101 | transposase | - |
| ECSE_RS24950 () | 83773..85065 | - | 1293 | WP_012565250.1 | hypothetical protein | VF |
| ECSE_RS24955 () | 85065..85721 | - | 657 | WP_001193553.1 | hypothetical protein | VF |
| ECSE_RS24960 () | 85706..86266 | - | 561 | WP_000014116.1 | hypothetical protein | VF |
| ECSE_RS24965 () | 86276..86890 | - | 615 | WP_000959782.1 | hypothetical protein | VF |
| ECSE_RS24970 () | 86908..88005 | - | 1098 | WP_001208806.1 | hypothetical protein | VF |
| ECSE_RS24975 () | 88018..89571 | - | 1554 | WP_000362203.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| ECSE_RS24980 () | 89582..90034 | - | 453 | WP_001247329.1 | hypothetical protein | VF |
| ECSE_RS24985 () | 90021..91316 | - | 1296 | WP_000752781.1 | type 4b pilus protein PilO2 | - |
| ECSE_RS24990 () | 91309..92991 | - | 1683 | WP_000733118.1 | Outer membrane lipoprotein BfpB | VF |
| ECSE_RS24995 () | 93005..93442 | - | 438 | WP_000539810.1 | hypothetical protein | VF |
| ECSE_RS25000 () | 93442..94509 | - | 1068 | WP_012565251.1 | hypothetical protein | VF |
| ECSE_RS25005 () | 95183..95584 | - | 402 | WP_049768382.1 | hypothetical protein | - |
| ECSE_RS25010 () | 95572..95826 | - | 255 | WP_001136193.1 | PilI type IV pilus biogenesis protein | - |
| ECSE_RS25015 () | 95990..96541 | - | 552 | WP_000744644.1 | hypothetical protein | - |
| ECSE_RS25020 () | 96714..97397 | - | 684 | WP_000213859.1 | conjugal transfer protein TraC | - |
| ECSE_RS25025 () | 97651..98184 | - | 534 | WP_001372168.1 | transcription termination factor NusG | - |
| ECSE_RS25030 () | 98626..98913 | - | 288 | WP_000074855.1 | conjugal transfer protein TraA | - |
| ECSE_RS25035 () | 98831..99094 | - | 264 | WP_023156844.1 | ash family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|