MGE detailed information
MGE type: Prophage MGE length: 24961 bp
Accession: NC_008686 Location: 2057841..2082801 Organism: Paracoccus denitrificans PD1222 Replicon: chromosome
Accession: NC_008686 Location: 2057841..2082801 Organism: Paracoccus denitrificans PD1222 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PDEN_RS10170 () | 2053922..2056063 | + | 2142 | WP_011748334.1 | TonB-dependent receptor | - |
| PDEN_RS10175 () | 2056156..2057076 | + | 921 | WP_011748335.1 | arginase | - |
| PDEN_RS10185 () | 2057841..2058308 | - | 468 | WP_011748337.1 | sigma-70 family RNA polymerase sigma factor | - |
| PDEN_RS26930 () | 2058305..2058454 | - | 150 | WP_157137434.1 | hypothetical protein | - |
| PDEN_RS10190 () | 2058451..2058672 | - | 222 | WP_128492944.1 | hypothetical protein | - |
| PDEN_RS26935 () | 2060592..2060891 | + | 300 | WP_011748340.1 | hypothetical protein | - |
| PDEN_RS10205 () | 2060891..2061109 | + | 219 | WP_011748341.1 | hypothetical protein | - |
| PDEN_RS10210 () | 2061405..2062328 | + | 924 | WP_011748342.1 | hypothetical protein | - |
| PDEN_RS10215 () | 2062421..2062609 | - | 189 | WP_041529929.1 | hypothetical protein | - |
| PDEN_RS26120 () | 2063225..2063761 | - | 537 | WP_081465040.1 | helix-turn-helix domain-containing protein | - |
| PDEN_RS10225 () | 2063766..2065352 | - | 1587 | WP_041529931.1 | hypothetical protein | - |
| PDEN_RS10230 () | 2065737..2066510 | - | 774 | WP_011748346.1 | DUF3987 domain-containing protein | - |
| PDEN_RS10235 () | 2066461..2066894 | - | 434 | Protein_2060 | IS5 family transposase IS1248B | Transposase |
| PDEN_RS26125 () | 2066958..2067452 | + | 495 | Protein_2061 | HNH endonuclease | - |
| PDEN_RS10240 () | 2067435..2068970 | - | 1536 | WP_011748348.1 | DNA cytosine methyltransferase | - |
| PDEN_RS10245 () | 2069038..2069502 | + | 465 | WP_011748349.1 | DNA mismatch endonuclease Vsr | - |
| PDEN_RS10250 () | 2069678..2070169 | - | 492 | WP_011748350.1 | phage terminase large subunit | - |
| PDEN_RS10255 () | 2070153..2070623 | - | 471 | WP_011748351.1 | phage terminase small subunit P27 family | - |
| PDEN_RS10260 () | 2070830..2071036 | + | 207 | WP_011748352.1 | cold-shock protein | - |
| PDEN_RS10265 () | 2071143..2071421 | + | 279 | WP_175474422.1 | DUF982 domain-containing protein | - |
| PDEN_RS26940 () | 2071520..2071678 | + | 159 | WP_157137435.1 | hypothetical protein | - |
| PDEN_RS10270 () | 2071691..2071915 | - | 225 | WP_011748354.1 | hypothetical protein | - |
| PDEN_RS10275 () | 2071912..2073273 | - | 1362 | WP_049792366.1 | site-specific DNA-methyltransferase | - |
| PDEN_RS10280 () | 2073402..2073797 | - | 396 | WP_011748356.1 | HNH endonuclease | - |
| PDEN_RS10285 () | 2073885..2074262 | - | 378 | WP_011748357.1 | hypothetical protein | - |
| PDEN_RS10290 () | 2074255..2074455 | - | 201 | WP_036744895.1 | hypothetical protein | - |
| PDEN_RS26135 () | 2074800..2076405 | - | 1606 | Protein_2074 | hypothetical protein | - |
| PDEN_RS10300 () | 2076402..2076602 | - | 201 | WP_011748360.1 | hypothetical protein | - |
| PDEN_RS10305 () | 2076726..2076965 | + | 240 | WP_011748361.1 | Arc family DNA-binding protein | Antitoxin Detail |
| PDEN_RS10310 () | 2076962..2077396 | + | 435 | WP_011748362.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| PDEN_RS10315 () | 2077384..2078100 | - | 717 | WP_011748363.1 | sigma-70 family RNA polymerase sigma factor | - |
| PDEN_RS10325 () | 2078525..2080687 | - | 2163 | WP_011748365.1 | hypothetical protein | - |
| PDEN_RS10330 () | 2081021..2081476 | + | 456 | WP_011748367.1 | DUF2924 domain-containing protein | - |
| PDEN_RS10335 () | 2081476..2082801 | + | 1326 | WP_011748368.1 | Tn3 family transposase TnpR_ISRsp12 | Transposase |
| PDEN_RS10340 () | 2082798..2083181 | + | 384 | WP_011748369.1 | hypothetical protein | - |
| PDEN_RS10345 () | 2083185..2084021 | - | 837 | WP_011748370.1 | DUF3883 domain-containing protein | - |
| PDEN_RS10350 () | 2084673..2085308 | + | 636 | Protein_2084 | WYL domain-containing protein | - |
| PDEN_RS10355 () | 2085280..2087601 | + | 2322 | Protein_2085 | sigma-70 family RNA polymerase sigma factor | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|