MGE detailed information
MGE type: Prophage MGE length: 57893 bp
Accession: NC_006155 Location: 3667983..3725875 Organism: Yersinia pseudotuberculosis IP 32953 Replicon: chromosome
Accession: NC_006155 Location: 3667983..3725875 Organism: Yersinia pseudotuberculosis IP 32953 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YPTB_RS16785 () | 3663200..3664708 | + | 1509 | WP_011192908.1 | sugar ABC transporter ATP-binding protein | - |
| YPTB_RS16790 () | 3664782..3665786 | + | 1005 | WP_002209904.1 | sugar ABC transporter permease | - |
| YPTB_RS16795 () | 3666203..3667204 | + | 1002 | WP_002209906.1 | substrate-binding domain-containing protein | - |
| YPTB_RS16800 () | 3667983..3668501 | + | 519 | WP_002209907.1 | hypothetical protein | - |
| YPTB_RS16805 () | 3668877..3669734 | + | 858 | WP_002209908.1 | YaeF family permuted papain-like enzyme | - |
| YPTB_RS16810 () | 3670177..3670857 | + | 681 | WP_011192909.1 | PadR family transcriptional regulator | - |
| YPTB_RS16815 () | 3670857..3671177 | + | 321 | WP_011192910.1 | DUF3861 domain-containing protein | - |
| YPTB_RS16820 () | 3671276..3671542 | - | 267 | WP_002209911.1 | hypothetical protein | VF |
| YPTB_RS16825 () | 3671798..3672577 | - | 780 | WP_002209912.1 | hypothetical protein | - |
| YPTB_RS16835 () | 3673182..3673949 | - | 768 | WP_002209913.1 | DUF3142 domain-containing protein | - |
| YPTB_RS16840 () | 3673919..3676078 | - | 2160 | WP_012413884.1 | hypothetical protein | - |
| YPTB_RS16845 () | 3676488..3676772 | - | 285 | WP_011192913.1 | colicin immunity protein | - |
| YPTB_RS16850 () | 3676819..3677022 | - | 204 | WP_002209915.1 | hypothetical protein | - |
| YPTB_RS16855 () | 3677395..3677589 | - | 195 | WP_033852438.1 | hypothetical protein | - |
| YPTB_RS16860 () | 3677589..3679121 | - | 1533 | WP_011192914.1 | S-type pyocin domain-containing protein | - |
| YPTB_RS16865 () | 3679626..3680768 | - | 1143 | WP_002209918.1 | Fic family protein | - |
| YPTB_RS16870 () | 3681037..3681402 | + | 366 | WP_011192915.1 | hypothetical protein | - |
| YPTB_RS23870 () | 3681415..3682071 | + | 657 | WP_011192916.1 | hypothetical protein | - |
| YPTB_RS16885 () | 3682253..3682453 | + | 201 | WP_002209920.1 | AlpA family transcriptional regulator | - |
| YPTB_RS24140 () | 3682467..3682619 | - | 153 | WP_002209921.1 | hypothetical protein | - |
| YPTB_RS16895 () | 3682612..3682938 | - | 327 | WP_011192917.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| YPTB_RS16900 () | 3683238..3685529 | + | 2292 | WP_011192918.1 | toprim domain-containing protein | - |
| YPTB_RS16905 () | 3685929..3686327 | - | 399 | WP_002209924.1 | type II toxin-antitoxin system MqsA family antitoxin | Antitoxin Detail |
| YPTB_RS16910 () | 3686327..3686623 | - | 297 | WP_024063131.1 | type II toxin-antitoxin system MqsR family toxin | Toxin Detail |
| YPTB_RS16915 () | 3686787..3687149 | - | 363 | WP_011192920.1 | helix-turn-helix domain-containing protein | - |
| YPTB_RS16920 () | 3687212..3687472 | - | 261 | WP_002214785.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| YPTB_RS16930 () | 3688070..3688255 | + | 186 | WP_002209928.1 | hypothetical protein | - |
| YPTB_RS16935 () | 3688397..3689380 | - | 984 | WP_011192921.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| YPTB_RS23095 () | 3689447..3689746 | - | 300 | WP_012413890.1 | helix-turn-helix domain-containing protein | - |
| YPTB_RS16940 () | 3689860..3690132 | + | 273 | WP_011192923.1 | hypothetical protein | - |
| YPTB_RS16945 () | 3690129..3690341 | + | 213 | WP_012413891.1 | hypothetical protein | - |
| YPTB_RS16950 () | 3690338..3690622 | + | 285 | WP_011192924.1 | hypothetical protein | - |
| YPTB_RS16955 () | 3690801..3691034 | - | 234 | WP_041175468.1 | hypothetical protein | - |
| YPTB_RS16960 () | 3691181..3691450 | + | 270 | WP_011192925.1 | hypothetical protein | - |
| YPTB_RS16965 () | 3691447..3691668 | + | 222 | WP_041175469.1 | DUF2724 domain-containing protein | - |
| YPTB_RS16970 () | 3691680..3692030 | + | 351 | WP_011192926.1 | DUF5347 family protein | - |
| YPTB_RS16975 () | 3692101..3692337 | + | 237 | WP_041175470.1 | hypothetical protein | - |
| YPTB_RS22185 () | 3692337..3693002 | + | 666 | WP_011192927.1 | DUF3850 domain-containing protein | - |
| YPTB_RS16985 () | 3693012..3693713 | + | 702 | WP_011192928.1 | 3'-5' exonuclease | - |
| YPTB_RS16995 () | 3694060..3696546 | + | 2487 | Protein_3201 | replication endonuclease | - |
| YPTB_RS17000 () | 3696877..3697143 | - | 267 | WP_086025326.1 | ogr/Delta-like zinc finger family protein | - |
| YPTB_RS17005 () | 3697200..3698267 | - | 1068 | WP_011192931.1 | phage portal protein | - |
| YPTB_RS17010 () | 3698264..3700069 | - | 1806 | WP_011192932.1 | terminase family protein | - |
| YPTB_RS17015 () | 3700242..3701330 | + | 1089 | WP_011192933.1 | GPO family capsid scaffolding protein | - |
| YPTB_RS17020 () | 3701365..3702393 | + | 1029 | WP_011192934.1 | phage major capsid protein, P2 family | - |
| YPTB_RS17025 () | 3702396..3703100 | + | 705 | WP_011192935.1 | terminase | - |
| YPTB_RS17030 () | 3703209..3703682 | + | 474 | WP_011192936.1 | head completion/stabilization protein | - |
| YPTB_RS17035 () | 3703679..3704173 | + | 495 | WP_011192937.1 | phage tail protein | - |
| YPTB_RS17040 () | 3704170..3704829 | + | 660 | WP_011192938.1 | hypothetical protein | - |
| YPTB_RS17045 () | 3704853..3706019 | + | 1167 | WP_011192939.1 | DUF2586 family protein | - |
| YPTB_RS17050 () | 3706022..3706477 | + | 456 | WP_011192940.1 | DUF2597 family protein | - |
| YPTB_RS17055 () | 3706487..3706789 | + | 303 | WP_011192941.1 | holin | - |
| YPTB_RS17060 () | 3706786..3707127 | + | 342 | WP_011192942.1 | M15 family metallopeptidase | - |
| YPTB_RS17065 () | 3707127..3707501 | + | 375 | WP_011192943.1 | hypothetical protein | - |
| YPTB_RS17075 () | 3707616..3707891 | + | 276 | WP_011192944.1 | hypothetical protein | - |
| YPTB_RS17080 () | 3707936..3708115 | + | 180 | WP_012413912.1 | hypothetical protein | - |
| YPTB_RS17085 () | 3708117..3710093 | + | 1977 | WP_011192945.1 | phage tail tape measure protein | - |
| YPTB_RS17090 () | 3710090..3710419 | + | 330 | WP_011192946.1 | DUF2590 family protein | - |
| YPTB_RS17095 () | 3710416..3711600 | + | 1185 | WP_011192947.1 | baseplate J/gp47 family protein | - |
| YPTB_RS17100 () | 3711593..3712216 | + | 624 | WP_011192948.1 | hypothetical protein | - |
| YPTB_RS17105 () | 3712226..3713821 | + | 1596 | WP_011192949.1 | phage tail protein | - |
| YPTB_RS17110 () | 3713821..3714339 | + | 519 | WP_011192950.1 | tail assembly chaperone | - |
| YPTB_RS17115 () | 3714336..3715046 | + | 711 | WP_011192951.1 | hypothetical protein | - |
| YPTB_RS17120 () | 3715039..3715593 | + | 555 | WP_011192952.1 | hypothetical protein | - |
| YPTB_RS17125 () | 3715590..3717311 | + | 1722 | WP_011192953.1 | hypothetical protein | - |
| YPTB_RS17130 () | 3718038..3719252 | - | 1215 | WP_011192954.1 | Prophage integrase IntS ; Integrase | Integrase |
| YPTB_RS17140 () | 3719685..3721202 | - | 1518 | WP_002209930.1 | lysine--tRNA ligase | - |
| YPTB_RS17150 () | 3722489..3724222 | - | 1734 | WP_002209931.1 | single-stranded-DNA-specific exonuclease RecJ | - |
| YPTB_RS17155 () | 3724229..3724945 | - | 717 | WP_002209932.1 | bifunctional protein-disulfide isomerase/oxidoreductase DsbC | - |
| YPTB_RS17160 () | 3724976..3725875 | - | 900 | WP_002209933.1 | IS91 family transposase ISAzo26 | Transposase |
| YPTB_RS17165 () | 3725982..3726500 | + | 519 | WP_011192956.1 | flavodoxin FldB | - |
| YPTB_RS17170 () | 3726585..3728042 | - | 1458 | WP_032466588.1 | cell envelope integrity protein CreD | - |
| YPTB_RS17175 () | 3728163..3729581 | - | 1419 | WP_002209936.1 | two-component system sensor histidine kinase CreC | - |
| YPTB_RS17180 () | 3729592..3730290 | - | 699 | WP_002209937.1 | two-component system response regulator CreB | - |
| YPTB_RS17185 () | 3730290..3730715 | - | 426 | WP_002215144.1 | protein YgfX | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|