MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 68525 bp
Accession: NC_006153 Location: 1..68525 Organism: Yersinia pseudotuberculosis IP 32953 Replicon: plasmid pYV
Accession: NC_006153 Location: 1..68525 Organism: Yersinia pseudotuberculosis IP 32953 Replicon: plasmid pYV
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YPTB_RS21465 () | 12..2210 | - | 2199 | WP_011191359.1 | Protein kinase YpkA | VF |
| YPTB_RS21470 () | 2218..2667 | - | 450 | WP_002229809.1 | hypothetical protein | VF |
| YPTB_RS23400 () | 2919..3233 | - | 315 | Protein_2 | IS3 family transposase ISKpn37 | Transposase |
| YPTB_RS23405 () | 3411..3650 | - | 240 | WP_002213291.1 | hypothetical protein | - |
| YPTB_RS21480 () | 4823..5701 | - | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| YPTB_RS21485 () | 5682..5756 | - | 75 | WP_002233140.1 | RepA leader peptide Tap | - |
| YPTB_RS21490 () | 5998..6252 | - | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
| YPTB_RS21495 () | 6390..6638 | - | 249 | WP_032466929.1 | phospholipase | - |
| YPTB_RS23965 () | 6836..7072 | + | 237 | Protein_8 | DDE-type integrase/transposase/recombinase | - |
| YPTB_RS24050 () | 7055..7462 | - | 408 | WP_012414142.1 | IS3 family transposase ISKpn37 | Transposase |
| YPTB_RS21505 () | 7489..7806 | - | 318 | WP_002213244.1 | IS3 family transposase ISKpn37 | Transposase |
| YPTB_RS21510 () | 7978..8436 | - | 459 | WP_002213246.1 | hypothetical protein | - |
| YPTB_RS21515 () | 8505..8774 | + | 270 | WP_042469136.1 | transposase | - |
| YPTB_RS23970 () | 8801..9100 | + | 300 | WP_106461760.1 | hypothetical protein | - |
| YPTB_RS21525 () | 9103..10401 | - | 1299 | WP_011191362.1 | Adhesin YadA | VF |
| YPTB_RS23640 () | 11004..11353 | + | 350 | Protein_15 | IS3 family transposase | - |
| YPTB_RS21535 () | 11386..13701 | - | 2316 | WP_002213256.1 | Tn3 family transposase ISEc63 | Transposase |
| YPTB_RS21540 () | 13865..14416 | + | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| YPTB_RS21545 () | 14435..14899 | + | 465 | WP_012414143.1 | hypothetical protein | - |
| YPTB_RS21550 () | 15038..15367 | + | 330 | WP_002229829.1 | hypothetical protein | - |
| YPTB_RS23445 () | 15467..16566 | + | 1100 | WP_086025330.1 | IS3 family transposase ISYps8 | Transposase |
| YPTB_RS21565 () | 16714..17139 | - | 426 | WP_002213267.1 | hypothetical protein | VF |
| YPTB_RS21570 () | 17517..17915 | - | 399 | Protein_22 | IS21 family transposase IS21 | Transposase |
| YPTB_RS21575 () | 17915..19087 | - | 1173 | WP_011191364.1 | IS21 family transposase IS21 | Transposase |
| YPTB_RS21585 () | 19190..19834 | + | 645 | Protein_24 | IS3 family transposase ISYen3 | Transposase |
| YPTB_RS21590 () | 19897..20289 | - | 393 | WP_002213403.1 | YopE regulator | VF |
| YPTB_RS21595 () | 20483..21142 | + | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| YPTB_RS21600 () | 21282..21581 | - | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| YPTB_RS21605 () | 21574..21816 | - | 243 | WP_012414146.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| YPTB_RS23455 () | 21982..22274 | - | 293 | Protein_29 | IS6 family transposase ISEas1 | Transposase |
| YPTB_RS24165 () | 22359..22532 | + | 174 | WP_002213357.1 | hypothetical protein | - |
| YPTB_RS23975 () | 22682..22963 | - | 282 | WP_157868821.1 | hypothetical protein | - |
| YPTB_RS21615 () | 23123..24088 | - | 966 | WP_011191369.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| YPTB_RS21620 () | 24085..25251 | - | 1167 | WP_002220902.1 | hypothetical protein | VF |
| YPTB_RS23980 () | 26011..27160 | - | 1150 | Protein_34 | IS3 family transposase | - |
| YPTB_RS21640 () | 27269..27886 | - | 618 | WP_071879999.1 | conjugal transfer protein TraT | - |
| YPTB_RS23985 () | 28032..28332 | - | 301 | Protein_36 | IS3 family transposase | - |
| YPTB_RS21645 () | 28491..29039 | - | 549 | WP_011191373.1 | hypothetical protein | VF |
| YPTB_RS21650 () | 29513..30481 | + | 969 | WP_011191374.1 | Cysteine protease YopT | VF |
| YPTB_RS21655 () | 30481..30873 | + | 393 | WP_011191375.1 | Chaperone protein SycT | VF |
| YPTB_RS21660 () | 30917..31228 | - | 312 | WP_041175527.1 | hypothetical protein | - |
| YPTB_RS23485 () | 31279..31559 | + | 281 | Protein_41 | DDE-type integrase/transposase/recombinase | - |
| YPTB_RS21665 () | 31576..31995 | + | 420 | WP_011191376.1 | hypothetical protein | - |
| YPTB_RS23990 () | 32524..32742 | - | 219 | Protein_43 | IS6 family transposase | - |
| YPTB_RS23995 () | 32745..32990 | + | 246 | WP_123772489.1 | transposase | - |
| YPTB_RS21670 () | 32872..33189 | + | 318 | Protein_45 | IS256 family transposase ISSod4 | Transposase |
| YPTB_RS21675 () | 33232..34821 | - | 1590 | WP_041175528.1 | hypothetical protein | VF |
| YPTB_RS21680 () | 35209..35424 | - | 216 | WP_011191379.1 | hypothetical protein | - |
| YPTB_RS23490 () | 35445..36083 | + | 639 | Protein_48 | IS6 family transposase | - |
| YPTB_RS21685 () | 36551..37471 | - | 921 | WP_002212987.1 | Protein YopD | VF |
| YPTB_RS21690 () | 37490..38695 | - | 1206 | WP_011191382.1 | Protein YopB | VF |
| YPTB_RS21695 () | 38673..39179 | - | 507 | WP_011117633.1 | Chaperone protein IpgC | VF |
| YPTB_RS21700 () | 39192..40172 | - | 981 | WP_011191383.1 | Virulence-associated V antigen | VF |
| YPTB_RS21705 () | 40174..40461 | - | 288 | WP_002212973.1 | hypothetical protein | VF |
| YPTB_RS21710 () | 40503..40943 | - | 441 | WP_002220918.1 | hypothetical protein | VF |
| YPTB_RS21715 () | 40940..43054 | - | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| YPTB_RS21720 () | 43041..43385 | - | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| YPTB_RS21725 () | 43382..43750 | - | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| YPTB_RS21730 () | 43747..44118 | - | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| YPTB_RS21735 () | 44105..44383 | - | 279 | WP_002212965.1 | Protein TyeA | VF |
| YPTB_RS21740 () | 44364..45245 | - | 882 | WP_011191384.1 | Outer membrane protein YopN | VF |
| YPTB_RS21745 () | 45443..46762 | + | 1320 | WP_002212955.1 | putative ATP synthase YscN | VF |
| YPTB_RS21750 () | 46759..47223 | + | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| YPTB_RS21755 () | 47223..48590 | + | 1368 | WP_011191386.1 | hypothetical protein | VF |
| YPTB_RS21760 () | 48587..49510 | + | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| YPTB_RS21765 () | 49507..50160 | + | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| YPTB_RS21770 () | 50162..50428 | + | 267 | WP_002212945.1 | Surface presentation of antigens protein SpaQ | VF |
| YPTB_RS21775 () | 50425..51210 | + | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| YPTB_RS21780 () | 51210..52274 | + | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| YPTB_RS21785 () | 52850..53245 | + | 396 | WP_002222527.1 | Type 3 secretion system pilotin | VF |
| YPTB_RS21790 () | 53369..54184 | + | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| YPTB_RS21795 () | 54263..54361 | + | 99 | WP_011191387.1 | type III secretion system protein YscA | - |
| YPTB_RS21800 () | 54587..55000 | + | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| YPTB_RS21805 () | 55006..56829 | + | 1824 | WP_011191388.1 | Type 3 secretion system secretin | VF |
| YPTB_RS21810 () | 56826..58085 | + | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| YPTB_RS21815 () | 58082..58282 | + | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| YPTB_RS21820 () | 58283..58546 | + | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| YPTB_RS21825 () | 58548..58895 | + | 348 | WP_011191389.1 | Putative Yop proteins translocation protein G | VF |
| YPTB_RS21830 () | 58892..59389 | + | 498 | WP_011191390.1 | Yop proteins translocation protein H | VF |
| YPTB_RS21835 () | 59390..59737 | + | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| YPTB_RS21840 () | 59744..60478 | + | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| YPTB_RS21845 () | 60478..61107 | + | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| YPTB_RS21850 () | 61053..61718 | + | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| YPTB_RS21855 () | 61943..62290 | + | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| YPTB_RS23495 () | 62838..63854 | + | 1017 | Protein_84 | IS3 family transposase | - |
| YPTB_RS23500 () | 63873..64145 | + | 273 | Protein_85 | transposase | - |
| YPTB_RS21875 () | 64366..65772 | - | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| YPTB_RS24000 () | 66025..66111 | - | 87 | Protein_87 | hypothetical protein | - |
| YPTB_RS21880 () | 66111..66689 | + | 579 | Protein_88 | IS3 family transposase ISYps8 | Transposase |
| YPTB_RS21885 () | 67275..68141 | - | 867 | WP_002225474.1 | Effector protein YopJ | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|