Regulators of regulatory pathway: RNA degradation

All displayed regulators are experimentally validated.


Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negative regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Regulator ID Locus tag (Gene) Related T6SS Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)
REG0007 experimental Y880_04683 (pnp) T6SS01211 experimental; T6SS01212 experimental; T6SS01213 experimental protein RsmA regulatory pathway Pseudomonas aeruginosa PAK chromosome (NZ_CP020659) 4637120..4639225 (-) 489185761 PA0527.1 (RsmY) (↑); PA3621.1 (RsmZ) (↑)
REG0019 experimental PC1_3721 (Hfq) T6SS01001 insolico protein QS regulatory pathway Pectobacterium carotovorum subsp. carotovorum PC1 chromosome (CP001657) 4199890..4200189 (-) 251756660 hcp expression (↓)
REG0299 experimental VCA1552_RS00505 (hfq) T6SS01112 experimental protein QS regulatory pathway Vibrio cholerae strain A1552 chromosome (NZ_CP024867) 92673..92936 (+) 446974616 VCA1552_00351 (HapR) (↑)
REG0344 experimental BN49_RS26620 (hfq) T6SS01214 experimental protein QS regulatory pathway Klebsiella pneumoniae strain Kp52.145 chromosome (NZ_FO834906) 5173711..5174019 (-) 488974767 TssB transcription (↓)
REG0367 experimental H78_RS02920 (Hfq) - protein QS regulatory pathway Pseudomonas protegens strain H78 chromosome (NZ_CP013184) 662937..663197 (+) 495196588 T6SS transcription level (↓)
REG0058 experimental PA2976 (RNase E) T6SS00003 experimental protein Unknown Pseudomonas aeruginosa PAO1 chromosome (NC_002516) 3332881..3336054 (+) 15598172 PA0077 (icmF1) expression (↑)

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negative regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Regulator ID Locus tag (Gene) Related T6SS Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)
REG0007 experimental Y880_04683 (pnp) T6SS01211 experimental; T6SS01212 experimental; T6SS01213 experimental protein RsmA regulatory pathway Pseudomonas aeruginosa PAK chromosome (NZ_CP020659) 4637120..4639225 (-) 489185761 PA0527.1 (RsmY) (↑); PA3621.1 (RsmZ) (↑)
REG0019 experimental PC1_3721 (Hfq) T6SS01001 insolico protein QS regulatory pathway Pectobacterium carotovorum subsp. carotovorum PC1 chromosome (CP001657) 4199890..4200189 (-) 251756660 hcp expression (↓)
REG0299 experimental VCA1552_RS00505 (hfq) T6SS01112 experimental protein QS regulatory pathway Vibrio cholerae strain A1552 chromosome (NZ_CP024867) 92673..92936 (+) 446974616 VCA1552_00351 (HapR) (↑)
REG0344 experimental BN49_RS26620 (hfq) T6SS01214 experimental protein QS regulatory pathway Klebsiella pneumoniae strain Kp52.145 chromosome (NZ_FO834906) 5173711..5174019 (-) 488974767 TssB transcription (↓)
REG0367 experimental H78_RS02920 (Hfq) - protein QS regulatory pathway Pseudomonas protegens strain H78 chromosome (NZ_CP013184) 662937..663197 (+) 495196588 T6SS transcription level (↓)
REG0058 experimental PA2976 (RNase E) T6SS00003 experimental protein Unknown Pseudomonas aeruginosa PAO1 chromosome (NC_002516) 3332881..3336054 (+) 15598172 PA0077 (icmF1) expression (↑)

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negative regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Regulator ID Locus tag (Gene) Related T6SS Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)