Vibrio cholerae C6706



NZ_CP046844 (chromosome 1)
 


NZ_CP046845 (chromosome 2)
 


experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
T6SS ID Type Organism Replicon (Accession) Location Function
T6SS01168 experimentali1Vibrio cholerae C6706chromosome (NZ_CP046845)296505..315674anti-bacterial; anti-eukaryotic

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Regulator ID Locus tag (Gene) Related T6SS Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)
REG0021 experimental GPY04_RS11195 (CytR) T6SS01168 experimental protein Unknown Vibrio cholerae C6706 chromosome (NZ_CP046844) 2449479..2450486 (-) 446146597 Unknown (↓)
REG0022 experimental GPY04_RS03590 (TfoX) T6SS01168 experimental protein QS regulatory pathway Vibrio cholerae C6706 chromosome (NZ_CP046844) 777344..777952 (+) 487807468 Unknown (↓)
REG0023 experimental GPY04_RS00870 (HapR) T6SS01168 experimental protein QS regulatory pathway Vibrio cholerae C6706 chromosome (NZ_CP046844) 164935..165546 (-) 446262243 Unknown (↓)
REG0024 experimental GPY04_RS13335/VC0070 (tsrA) T6SS01168 experimental protein Global regulator Vibrio cholerae C6706 chromosome (NZ_CP046844) 2888303..2888587 (+) 445982516 T6SS transcripts (↑)
REG0025 experimental Qrr1 quorum regulatory RNA T6SS01168 experimental ncRNA QS regulatory pathway Vibrio cholerae C6706 chromosome (NZ_CP046844) - - VCA0107 mRNA (↑)
REG0026 experimental Qrr2 quorum regulatory RNA T6SS01168 experimental ncRNA QS regulatory pathway Vibrio cholerae C6706 chromosome (NZ_CP046844) - - VCA0107 mRNA (↑)
REG0027 experimental Qrr3 quorum regulatory RNA T6SS01168 experimental ncRNA QS regulatory pathway Vibrio cholerae C6706 chromosome (NZ_CP046844) - - VCA0107 mRNA (↑)
REG0028 experimental Qrr4 quorum regulatory RNA T6SS01168 experimental ncRNA QS regulatory pathway Vibrio cholerae C6706 chromosome (NZ_CP046844) - - VCA0107 mRNA (↑)
REG0030 experimental GPY04_RS13825 (QstR) T6SS01168 experimental protein Global regulator Vibrio cholerae C6706 chromosome (NZ_CP046844) 2994333..2994977 (-) 447111060 Unknown (↓)
REG0033 experimental GPY04_RS01040 (ChiS) T6SS01168 experimental protein ChiS-induced regulatory pathway Vibrio cholerae C6706 chromosome (NZ_CP046844) 210606..213995 (-) 446410424 Necessory for TfoX/TfoR (↓)
REG0034 experimental GPY04_RS03200 (chiA2) T6SS01168 experimental protein ChiS-induced regulatory pathway Vibrio cholerae C6706 chromosome (NZ_CP046844) 692014..695280 (+) 487807405 GPY04_RS01040 (ChiS) (↓)
REG0035 experimental GPY04_RS07700 (chiA1) T6SS01168 experimental protein ChiS-induced regulatory pathway Vibrio cholerae C6706 chromosome (NZ_CP046844) 1709613..1712153 (-) 446755770 GPY04_RS01040 (ChiS) (↓)
REG0029 experimental GPY04_RS15835 (luxO) T6SS01168 experimental protein QS regulatory pathway Vibrio cholerae C6706 chromosome (NZ_CP046845) 273631..274983 (-) 446367907 VC0070 (tsrA) (↑); GPY04_RS00870 (hapR) (↑)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Effector ID Locus tag (Gene) Classification Cognate immunity protein Related T6SS Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID
EFF01818 experimental GPY04_RS04830 (TleV1) Tle IMU00356 experimental T6SS01168 experimental Vibrio cholerae C6706 chromosome (NZ_CP046844) 1067605..1069530 (+) 446298981
EFF01819 experimental GPY04_RS04820 (VgrG-1) - - T6SS01168 experimental Vibrio cholerae C6706 chromosome (NZ_CP046844) 1063272..1066763 (+) 446134261
EFF01820 experimental GPY04_RS16385 (VasX) Tme IMU00357 experimental T6SS01168 experimental Vibrio cholerae C6706 chromosome (NZ_CP046845) 405867..409124 (-) 445992499
EFF01821 experimental GPY04_RS15920 - IMU00358 experimental T6SS01168 experimental Vibrio cholerae C6706 chromosome (NZ_CP046845) 291886..294939 (-) 446035440

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Immunity protein ID Locus tag (Gene) Related T6SS Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Cognate effector
IMU00356 experimental GPY04_RS04835 (TsiV1) T6SS01168 experimental Vibrio cholerae C6706 chromosome (NZ_CP046844) 1069527..1070270 (+) 446694188 EFF01819 experimental
IMU00357 experimental GPY04_RS16380 (TsiV2) T6SS01168 experimental Vibrio cholerae C6706 chromosome (NZ_CP046845) 405138..405866 (-) 446826823 EFF01821 experimental
IMU00358 experimental GPY04_RS15915 (TsiV3) T6SS01168 experimental Vibrio cholerae C6706 chromosome (NZ_CP046845) 291521..291889 (-) 446984039 EFF01821 experimental

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
ID           Locus tag (Gene) Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Response to T6SS attack Known or putative function

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Accessory protein ID Locus tag (Gene) Related T6SS Type             Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Related structure protein Related effector