Serratia marcescens subsp. marcescens Db11



Accession: HG326223
 


experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
T6SS ID Type Organism Replicon (Accession) Location Function
T6SS00929 experimentali3Serratia marcescens subsp. marcescens Db11chromosome I (HG326223)2365124..2402670anti-bacterial

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Regulator ID Locus tag (Gene) Related T6SS Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)
REG0014 experimental SMDB11_2275 (PpKA) T6SS00929 experimental protein Tpp Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 2399154..2400599 (+) 560174118 SMDB11_2267 (FHA) (↓)
REG0015 experimental SMDB11_2268 (PppA) T6SS00929 experimental protein Tpp Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 2390232..2391005 (+) 560174111 SMDB11_2267 (FHA) (↑)
REG0016 experimental SMDB11_2269 (RtkS) T6SS00929 experimental protein Tpp Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 2391034..2392020 (+) 560174112 SMDB11_2275 (PpKA) (↓)
REG0017 experimental SMDB11_2256 (TagF) T6SS00929 experimental protein Tpp Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 2380702..2381421 (+) 560174099 Unknown (↑)
REG0348 experimental SMDB11_2275 (PpkA) T6SS00929 experimental protein Tpp Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 2399154..2400599 (+) 560174118 SMDB11_2267/SMA2267 (Fha) (↓); SMDB11_2267/SMA2267 (Fha) (↑)
REG0349 experimental SMDB11_2267 (Fha) T6SS00929 experimental protein Tpp Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 2388490..2390232 (+) 560174110 Unknown (↓)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Effector ID Locus tag (Gene) Classification Cognate immunity protein Related T6SS Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID
EFF01503 experimental SMDB11_1112 (Ssp3) Tme - T6SS00929 experimental Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 1178412..1178963 (+) 560172958
EFF01506 experimental SMDB11_4673 (Ssp6) Tme - T6SS00929 experimental Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 5022150..5022797 (-) 560176492
EFF01514 experimental SMDB11_1083 (Tfe2) Tme - T6SS00929 experimental Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 1147856..1148536 (+) 560172929
EFF01836 experimental SMDB11_0810 Tme IMU00354 experimental T6SS00929 experimental Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 838784..839398 (-) 560172663
EFF01502 experimental SMDB11_2261 (Ssp1) Tae - T6SS00929 experimental Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 2385090..2385581 (+) 560174104
EFF01510 experimental SMDB11_2264 (ssp2) Tae - T6SS00929 experimental Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 2386769..2387245 (+) 560174107
EFF01505 experimental SMDB11_4628 (Ssp5) Tse - T6SS00929 experimental Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 4979889..4980716 (+) 560176449
EFF01499 experimental SMDB11_1610 (Rhs2) Tde IMU00320 experimental T6SS00929 experimental Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 1689650..1693942 (+) 560173453
EFF01515 experimental SMDB11_1610 (Rhs2) Tse - T6SS00929 experimental Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 1693944..1694432 (+) 560173454
EFF01501 experimental SMDB11_0927 (Slp) Tle IMU00316 experimental; IMU00318 experimental T6SS00929 experimental Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 971234..972886 (+) 560172775
EFF01516 experimental SMDB11_2278 (Rhs1) Tse - T6SS00929 experimental Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 2407591..2408079 (+) 560174122
EFF01500 experimental SMDB11_2278 (Rhs1) Tse IMU00319 experimental T6SS00929 experimental Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 2403168..2407589 (+) 560174121
EFF01504 experimental SMDB11_3980 (Ssp4) Tse - T6SS00929 experimental Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 4242848..4243843 (-) 560175802
EFF01507 experimental SMDB11_3455 (Hcp) - - T6SS00929 experimental Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 3668310..3668792 (+) 560175282
EFF01508 experimental SMDB11_3456 (Hcp) - - T6SS00929 experimental Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 3668840..3669322 (+) 560175283
EFF01509 experimental SMDB11_2263 (Hcp) - - T6SS00929 experimental Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 2386232..2386714 (+) 560174106
EFF01512 experimental SMDB11_2244 (VgrG) - - T6SS00929 experimental Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 2365103..2367463 (+) 560174087
EFF01513 experimental SMDB11_2276 (VgrG) - - T6SS00929 experimental Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 2400742..2402670 (+) 560174119

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
ID           Locus tag (Gene) Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Response to T6SS attack Known or putative function
RSF000050 experimental SMDB11_4101 (DsbA1) Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 4377737..4378360 (-) 560175924 sensitive Effector activator
RSF000051 experimental SMDB11_0239 (DsbA2) Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 265001..265642 (+) 560172104 sensitive Effector activator

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Accessory protein ID Locus tag (Gene) Related T6SS Type             Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Related structure protein Related effector
ACP00028 experimental SMDB11_4101 (dsbA1) T6SS00929 experimental chaperone Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 4377737..4378360 (-) 560175924 SMDB11_2255 (TssM); SMDB11_2251; SMDB11_2269 SMDB11_3980 (Ssp4); SMDB11_2264 (Ssp2)
ACP00029 experimental SMDB11_0239 (dsbA2) T6SS00929 experimental chaperone Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 265001..265642 (+) 560172104 SMDB11_2255 (TssM); SMDB11_2251; SMDB11_2269 SMDB11_3980 (Ssp4); SMDB11_2264 (Ssp2)
ACP00030 experimental SMDB11_1609 (eagR2) T6SS00929 experimental adaptor Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 1689187..1689618 (+) 560173452 SMDB11_2276 (VgrG2b) SMDB11_1610 (Rhs2)
ACP00031 experimental SMDB11_2245 (eagR1) T6SS00929 experimental adaptor Serratia marcescens subsp. marcescens Db11 chromosome (HG326223) 2367474..2367863 (+) 560174088 SMDB11_2276 (VgrG2b) SMDB11_2278 (Rhs1)