Pseudomonas protegens Pf-5



Accession: NC_004129
 


experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
T6SS ID Type Organism Replicon (Accession) Location Function
T6SS00035 experimentali3Pseudomonas protegens Pf-5chromosome (NC_004129)6897920..6930515anti-bacterial; effector translocation

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Regulator ID Locus tag (Gene) Related T6SS Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)
REG0091 experimental PFL_RS17995 (gacA/uvrY/SirA) T6SS00035 experimental protein TCS-RR Pseudomonas protegens Pf-5 chromosome (NC_004129) 4110513..4111154 (-) 499374263 T6SS transcripts (↓)
REG0092 experimental PFL_RS30815 (pppA) T6SS00035 experimental protein Tpp Pseudomonas protegens Pf-5 chromosome (NC_004129) 6902924..6903658 (-) 499376669 Hcp secretion (↑)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Effector ID Locus tag (Gene) Classification Cognate immunity protein Related T6SS Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID
EFF01474 experimental PFL_6096 (rhsA) Tde IMU00300 experimental T6SS00035 experimental Pseudomonas protegens Pf-5 chromosome (NC_004129) 6925413..6929873 (+) 68347678
EFF00045 experimental PFL_5498 (Tae3) Tae IMU00073 experimental T6SS00035 experimental Pseudomonas protegens Pf-5 chromosome (NC_004129) 6278373..6278744 (+) 70732799
EFF00434 experimental PFL_3037 (Tge2) Tge IMU00074 experimental T6SS00035 experimental Pseudomonas protegens Pf-5 chromosome (NC_004129) 3502760..3503293 (-) 70730402
EFF01475 experimental PFL_6209 (Tne2) Tne IMU00301 experimental T6SS00035 experimental Pseudomonas protegens Pf-5 chromosome (NC_004129) 7049182..7050408 (+) 68347791

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Immunity protein ID Locus tag (Gene) Related T6SS Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Cognate effector
IMU00073 experimental PFL_5499 (Tai3) T6SS00035 experimental Pseudomonas protegens Pf-5 chromosome (NC_004129) 6278755..6279204 (+) 70732800 EFF01475 experimental
IMU00074 experimental PFL_3036 (Tgi2) T6SS00035 experimental Pseudomonas protegens Pf-5 chromosome (NC_004129) 3502296..3502766 (-) 70730401 EFF01475 experimental
IMU00300 experimental PFL_6097 (rhsI) T6SS00035 experimental Pseudomonas protegens Pf-5 chromosome (NC_004129) 6929889..6930515 (+) 70733380 EFF01475 experimental
IMU00301 experimental PFL_6210 (Tni2) T6SS00035 experimental Pseudomonas protegens Pf-5 chromosome (NC_004129) 7050414..7050875 (+) 70733493 EFF01475 experimental

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
ID           Locus tag (Gene) Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Response to T6SS attack Known or putative function

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Accessory protein ID Locus tag (Gene) Related T6SS Type             Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Related structure protein Related effector
ACP00012 experimental PFL_6095 (eagR1) T6SS00035 experimental adaptor Pseudomonas protegens Pf-5 chromosome (NC_004129) 6924978..6925403 (+) 499376685 - PFL_6096 (RhsA)
ACP00013 experimental PFL_6099 (eagT2) T6SS00035 experimental adaptor Pseudomonas protegens Pf-5 chromosome (NC_004129) 6930853..6931287 (-) 499376689 - PFL_6209 (Tne2)