Escherichia coli 042



Accession: NC_017626
 


Accession: NC_017627
 


experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
T6SS ID Type Organism Replicon (Accession) Location Function
T6SS00463 experimentali2Escherichia coli 042chromosome (NC_017626)4852875..4885437effector translocation
T6SS00464 experimentali4bEscherichia coli 042chromosome (NC_017626)4893076..4921378effector translocation

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Regulator ID Locus tag (Gene) Related T6SS Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)
REG0249 experimental EC042_RS18855 (FIS) T6SS00464 experimental protein Transcription regulator Escherichia coli 042 chromosome (NC_017626) 3772795..3773091 (+) 446385050 EC042_RS26480 (aggR) promoter (↓)
REG0250 experimental EC042_RS06800 (Hns) T6SS00464 experimental protein Global regulator Escherichia coli 042 chromosome (NC_017626) 1376831..1377244 (-) 447210122 EC042_RS26480 (aggR) promoter (↑)
REG0251 experimental EC042_RS03685 (Fur) T6SS00464 experimental protein Global regulator Escherichia coli 042 chromosome (NC_017626) 786918..787364 (-) 446053847 EC042_4532 promoter (↑); EC042_4524 (TssB) promotor (↑)
REG0252 experimental EC042_RS19435 (Dam) T6SS00464 experimental protein Global regulator Escherichia coli 042 chromosome (NC_017626) 3861171..3862007 (-) 446664793 EC042_4532 promoter (↑)
REG0248 experimental EC042_RS26480 (aggR) T6SS00464 experimental protein Transcription regulator Escherichia coli 042 plasmid (NC_017627) 41080..41877 (-) 446692110 EC042_RS26480 (aggR) promoter (↓); EC042_RS26480 (aggR) promoter (↓)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Effector ID Locus tag (Gene) Classification Cognate immunity protein Related T6SS Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID
EFF01465 experimental EC042_RS24220 Tle IMU00313 experimental T6SS00931 experimental Escherichia coli 042 chromosome (NC_017626) 4865605..4867287 (+) 284924255
EFF00560 experimental EC042_RS24195 - - T6SS00463 experimental Escherichia coli 042 chromosome (NC_017626) 4858680..4859171 (+) 387609950
EFF00561 experimental EC042_4564 (AaiC) - - T6SS00464 experimental Escherichia coli 042 chromosome (NC_017626) 4895043..4895549 (+) 387609980

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Immunity protein ID Locus tag (Gene) Related T6SS Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Cognate effector
IMU00313 experimental EC042_4535 (Tli1EAEC) T6SS00463 experimental Escherichia coli 042 chromosome (NC_017626) 4867307..4867984 (+) 446118504 EFF00561 experimental

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
ID           Locus tag (Gene) Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Response to T6SS attack Known or putative function

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Accessory protein ID Locus tag (Gene) Related T6SS Type             Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Related structure protein Related effector
ACP00032 experimental EC042_RS24300 (tagA) T6SS00931 experimental structure affiliated protein Escherichia coli 042 chromosome (NC_017626) 4884070..4885437 (+) 446122356 TssA -
ACP00033 experimental EC042_RS24190 (tagL/ompA) T6SS00931 experimental structure affiliated protein Escherichia coli 042 chromosome (NC_017626) 4856944..4858674 (+) 446480629 TssL peptidoglycan
ACP00034 experimental EC042_1244 (mltE) T6SS00931 experimental structure affiliated protein Escherichia coli 042 chromosome (NC_017626) 1322321..1322932 (+) 481024453 TssM -
ACP00035 experimental EC042_RS24190 (sciZ) T6SS00931 experimental structure affiliated protein Escherichia coli 042 chromosome (NC_017626) 4856944..4858674 (+) 446480629 SciP peptidoglycan
ACP00036 experimental EC042_RS21585 (yidC) T6SS00931 experimental chaperone Escherichia coli 042 chromosome (NC_017626) 4320019..4321665 (+) 446300403 TssL -
ACP00037 experimental EC042_RS00085 (dnaK) T6SS00931 experimental chaperone Escherichia coli 042 chromosome (NC_017626) 13600..15516 (+) 446438280 TssL -