Agrobacterium fabrum str. C58



Accession: NC_003063
 


Accession: NC_003064
 


Accession: NC_003062
 


experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
T6SS ID Type Organism Replicon (Accession) Location Function
T6SS00016 experimentali5Agrobacterium fabrum str. C58chromosome linear (NC_003063)1460756..1488734anti-eukaryotic; anti-bacterial; effector translocation

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Regulator ID Locus tag (Gene) Related T6SS Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)
REG0077 experimental Atu4335 (Fha/TagH) T6SS00016 experimental protein Tpp Agrobacterium fabrum str. C58 chromosome (NC_003063) 1467064..1468263 (-) 499280697 Unknown (↓)
REG0078 experimental Atu4330 (PpkA) T6SS00016 experimental protein Tpp Agrobacterium fabrum str. C58 chromosome (NC_003063) 1458366..1459271 (-) 737274050 Unknown (↓)
REG0079 experimental Atu4331 (TagF-PppA) T6SS00016 experimental protein Tpp Agrobacterium fabrum str. C58 chromosome (NC_003063) 1459258..1460673 (-) 159186120 Fha (Atu4335) (↑)
REG0080 experimental Atu2091 T6SS00016 experimental protein c-di-GMP regulatory pathway Agrobacterium fabrum str. C58 chromosome (NC_003063) 2054055..2054864 (-) 159185045 the levels of c-di-GMP (↑)
REG0081 experimental Atu5372 T6SS00016 experimental protein c-di-GMP regulatory pathway Agrobacterium fabrum str. C58 chromosome (NC_003064) 363293..364387 (+) 1805892863 the levels of c-di-GMP (↑)
REG0082 experimental Atu1257 (DgcA) T6SS00016 experimental protein c-di-GMP regulatory pathway Agrobacterium fabrum str. C58 chromosome (NC_003062) 1244567..1245814 (-) 159184686 the levels of c-di-GMP (↑)
REG0083 experimental Atu2179 (DgcC) T6SS00016 experimental protein c-di-GMP regulatory pathway Agrobacterium fabrum str. C58 chromosome (NC_003062) 2154605..2155744 (-) 159185090 the levels of c-di-GMP (↑)
REG0084 experimental chvG T6SS00016 experimental protein TCS-HK Agrobacterium fabrum str. C58 chromosome (NC_003062) 34679..36469 (-) chvI (↓)
REG0085 experimental chvI T6SS00016 experimental protein TCS-RR Agrobacterium fabrum str. C58 chromosome (NC_003062) 36525..37250 (-) The intergenic region of the imp and hcp operons (↓)
REG0086 experimental exoR T6SS00016 experimental protein TCS regulatory pathway Agrobacterium fabrum str. C58 chromosome (NC_003062) 1702398..1703192 (-) chvG (↑)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Effector ID Locus tag (Gene) Classification Cognate immunity protein Related T6SS Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID
EFF00996 experimental Atu4347 (Tae4) Tae IMU00053 experimental; IMU00192 experimental T6SS00016 experimental Agrobacterium fabrum str. C58 chromosome (NC_003063) 1480980..1481480 (+) 159186127
EFF01308 experimental Atu4350 (Tde1) Tde - T6SS00016 experimental Agrobacterium fabrum str. C58 chromosome (NC_003063) 1484901..1485737 (+) 15890633
EFF01307 experimental Atu3640 (Tde2) Tde IMU00054 experimental T6SS00016 experimental Agrobacterium fabrum str. C58 chromosome (NC_003063) 692241..693821 (-) 15891300
EFF00024 experimental ATU_RS20350 - - T6SS00016 experimental Agrobacterium fabrum str. C58 chromosome (NC_003063) 1479996..1480472 (+) 15890638

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Immunity protein ID Locus tag (Gene) Related T6SS Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Cognate effector
IMU00053 experimental Atu4351 (Tdi1) T6SS00016 experimental Agrobacterium fabrum str. C58 chromosome (NC_003063) 1485765..1486439 (+) 15890632 EFF00024 experimental
IMU00054 experimental Atu3639 (Tdi2) T6SS00016 experimental Agrobacterium fabrum str. C58 chromosome (NC_003063) 691507..692238 (-) 159185838 EFF00024 experimental
IMU00192 experimental Atu4346 (Tai4) T6SS00016 experimental Agrobacterium fabrum str. C58 chromosome (NC_003063) 1480579..1480968 (+) 159186126 EFF00024 experimental

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
ID           Locus tag (Gene) Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Response to T6SS attack Known or putative function

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed
Accessory protein ID Locus tag (Gene) Related T6SS Type             Organism                 Replicon (Accession) Coordinates (Strand) Protein GI Related structure protein Related effector
ACP00010 experimental Atu4349 (tap-1) T6SS00016 experimental adaptor Agrobacterium fabrum str. C58 chromosome (NC_003063) 1483948..1484904 (+) 737273750 Atu4348 (VgrG1) Atu4350 (Tde1)
ACP00011 experimental Atu3641 T6SS00016 experimental adaptor Agrobacterium fabrum str. C58 chromosome (NC_003063) 693818..694927 (-) 499279473 Atu3642 (VgrG2) Atu3640 (Tde2)