Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABFU46_RS05560 Genome accession   NZ_CP155941
Coordinates   1302325..1303719 (-) Length   464 a.a.
NCBI ID   WP_012437607.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain IPV-CT 62.4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1297325..1308719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU46_RS05540 (ABFU46_05540) pilC 1297573..1298829 (-) 1257 WP_011038215.1 type II secretion system F family protein Machinery gene
  ABFU46_RS05545 (ABFU46_05545) pilE 1299156..1299596 (+) 441 WP_011038214.1 pilin Machinery gene
  ABFU46_RS05550 (ABFU46_05550) - 1299709..1300110 (+) 402 WP_194734302.1 pilin -
  ABFU46_RS05555 (ABFU46_05555) pilB 1300175..1301908 (+) 1734 WP_011038212.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFU46_RS05560 (ABFU46_05560) pilR 1302325..1303719 (-) 1395 WP_012437607.1 sigma-54 dependent transcriptional regulator Regulator
  ABFU46_RS05565 (ABFU46_05565) - 1303928..1305538 (-) 1611 WP_012437608.1 PAS domain-containing sensor histidine kinase -
  ABFU46_RS05570 (ABFU46_05570) sucC 1305772..1306941 (+) 1170 WP_012437609.1 ADP-forming succinate--CoA ligase subunit beta -
  ABFU46_RS05575 (ABFU46_05575) sucD 1306966..1307841 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  ABFU46_RS05580 (ABFU46_05580) - 1307945..1308355 (+) 411 WP_029217117.1 CopG family ribbon-helix-helix protein -
  ABFU46_RS05585 (ABFU46_05585) - 1308359..1308661 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50253.62 Da        Isoelectric Point: 6.3587

>NTDB_id=999967 ABFU46_RS05560 WP_012437607.1 1302325..1303719(-) (pilR) [Xanthomonas campestris pv. campestris strain IPV-CT 62.4]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=999967 ABFU46_RS05560 WP_012437607.1 1302325..1303719(-) (pilR) [Xanthomonas campestris pv. campestris strain IPV-CT 62.4]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCGCCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAAAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCGGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
GTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACGCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAACTCCGTGTTCCACCGCTGCGCGAGCGCAGTGGCGATCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGGCTGGCCCGCAGCCATGGCCGCCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
TGCATTGGATACTTACGGCTTTCCGGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCAGCGATCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACCGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCGGCTTCCTCCGCCCTGCCCTCCTACATCGAACAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTCGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAACTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment