Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   EL078_RS08120 Genome accession   NZ_LR134282
Coordinates   1623730..1626192 (+) Length   820 a.a.
NCBI ID   WP_126438107.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC8140     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1618730..1631192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL078_RS08100 (NCTC8140_01641) - 1621127..1621675 (-) 549 WP_126438104.1 CvpA family protein -
  EL078_RS08105 (NCTC8140_01642) - 1621681..1621989 (-) 309 WP_004233227.1 hypothetical protein -
  EL078_RS08110 (NCTC8140_01643) rnhC 1622110..1623009 (+) 900 WP_126438105.1 ribonuclease HIII -
  EL078_RS08115 (NCTC8140_01644) lepB 1623025..1623618 (+) 594 WP_126438106.1 signal peptidase I -
  EL078_RS08120 (NCTC8140_01645) recD/recD2/recDB 1623730..1626192 (+) 2463 WP_126438107.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EL078_RS08125 (NCTC8140_01646) - 1626434..1626928 (+) 495 WP_027968357.1 hypothetical protein -
  EL078_RS08130 (NCTC8140_01647) dinB 1626978..1628075 (-) 1098 WP_021143134.1 DNA polymerase IV -
  EL078_RS08135 (NCTC8140_01648) pflB 1628298..1630622 (+) 2325 WP_021143135.1 formate C-acetyltransferase -
  EL078_RS08140 (NCTC8140_01649) - 1630683..1631120 (+) 438 WP_027968356.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 820 a.a.        Molecular weight: 92481.47 Da        Isoelectric Point: 4.3473

>NTDB_id=999847 EL078_RS08120 WP_126438107.1 1623730..1626192(+) (recD/recD2/recDB) [Streptococcus equinus strain NCTC8140]
MEYFFSGIVERIIFENASNFFKIVLLEIEDTDSDFDDFEIIVTGTMAEIIEGENYTFWGELTQHPKYGEQLKLTRYERSK
PSSSGLIKYFSSEHFKGIGKKTAEKIVQLYGEDTIDKILEDPSKLDSISGLSKENRDNFVAKLKLNYGTEQILAKLAEYG
LTNRVAFEIFNQYKEESLDIIQENPYQLVEDIQGIGFKIADQLAEQLGIEADSPQRFRAALVHTLFELSVENGDTYVEAR
DLLENAITILEEARQIELDPAAVAKELSTLIAEDKVQNIGTKIFDNTLFYAEAGIKKHLTRILDTPLSKQFSDEELEEEI
AEVEENFGISYDQVQKDAIKNALQSKVFILTGGPGTGKTTVINGLIETYAALHHINLEKKDIPIILAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMDDYLDCDLIIIDEFSMVDTWLANQLFSSISSNTQVIIVGDSDQLPSVGPGQVLADLL
KIKELPQLALTKIFRQSEDSTIVTLANQMRQGILPTDFTQKKADRSYFEASAQYIPEMIPKIVSAAIKSGISPQEIQILA
PMYRGAAGINRLNTIIQDLLNPLGDQLSFAFGEMNFRKGDKVLHLINDAELNVFNGDIGYITDLIPAKYTESKQDELFMS
FDGTEVSYPRNEWHKITLAYAMSIHKSQGSEFQVVILPITRQSHRLLQRNLIYTAITRSKSKLVMLGEIAAFDYAIKNEG
AKRNTYLVERFTGDEELPEMDSSENITDSEIQEQETTKSIPSNSEEENSSKKAEQLSLDIEEELETEEPKIYRLTEENMA
FIDPMIGITQIDIEQFFKRS

Nucleotide


Download         Length: 2463 bp        

>NTDB_id=999847 EL078_RS08120 WP_126438107.1 1623730..1626192(+) (recD/recD2/recDB) [Streptococcus equinus strain NCTC8140]
ATGGAATACTTCTTTTCTGGCATTGTTGAGCGTATTATTTTTGAAAATGCCAGTAACTTTTTTAAAATCGTACTACTCGA
AATCGAAGATACTGACTCTGATTTCGATGATTTTGAAATCATTGTCACAGGGACAATGGCTGAAATCATTGAAGGAGAAA
ATTATACTTTCTGGGGTGAATTGACCCAGCATCCAAAATACGGTGAGCAGCTTAAACTCACGCGCTACGAGCGTTCAAAG
CCAAGCTCATCTGGATTGATTAAATATTTTTCAAGCGAGCACTTTAAAGGGATTGGTAAAAAAACTGCTGAAAAAATTGT
ACAACTCTACGGCGAAGACACCATCGATAAAATCCTAGAAGACCCAAGTAAACTCGACAGTATTTCAGGACTTTCTAAGG
AAAATCGTGATAATTTTGTTGCCAAATTAAAACTCAATTATGGTACAGAGCAAATCCTTGCCAAACTTGCTGAGTATGGG
TTGACTAACCGTGTGGCTTTTGAGATTTTTAACCAGTACAAGGAAGAAAGCCTTGATATTATCCAAGAAAATCCTTATCA
ACTCGTTGAAGACATCCAAGGGATTGGCTTTAAAATAGCTGACCAACTGGCTGAGCAGTTAGGCATTGAAGCAGATTCTC
CACAACGTTTTCGTGCGGCACTTGTCCACACATTATTCGAACTTTCTGTGGAAAACGGCGATACTTATGTCGAGGCGCGT
GATTTATTAGAAAATGCCATCACTATTCTTGAAGAAGCACGACAAATCGAACTTGACCCCGCAGCTGTTGCTAAAGAGTT
ATCCACACTTATTGCTGAAGACAAGGTGCAGAATATCGGTACTAAGATTTTTGACAACACGCTCTTTTATGCTGAAGCAG
GCATCAAAAAACATTTGACACGTATCCTTGATACCCCACTGTCTAAGCAATTTTCAGACGAAGAGCTAGAAGAAGAAATC
GCTGAAGTCGAAGAAAATTTTGGGATTTCTTATGACCAAGTGCAAAAAGATGCCATCAAAAATGCCCTGCAAAGCAAAGT
CTTTATCCTAACTGGTGGACCAGGGACAGGAAAAACGACCGTTATCAACGGTTTAATTGAAACCTATGCTGCTCTTCACC
ACATTAACCTTGAGAAAAAAGATATCCCAATCATTCTAGCAGCTCCAACTGGTCGTGCAGCCCGTCGTATGAACGAATTG
ACTGGCTTACCAAGTGCCACAATTCACCGCCATCTTGGTTTAAATGGCGATAATGACTATCAAGCTATGGATGATTATCT
TGATTGTGACTTGATTATCATCGATGAGTTTTCAATGGTCGATACATGGCTTGCTAACCAACTGTTTAGCTCTATTTCAT
CAAATACTCAAGTTATCATCGTCGGAGATAGCGACCAATTGCCTTCGGTAGGACCTGGACAAGTTTTGGCAGATTTATTA
AAAATCAAAGAATTGCCGCAATTAGCACTGACAAAAATCTTCAGGCAATCAGAAGATTCAACTATCGTTACTTTAGCTAA
TCAAATGAGACAAGGCATCTTGCCAACTGATTTCACACAGAAAAAAGCTGACCGCTCTTATTTTGAAGCTAGCGCCCAAT
ACATTCCTGAAATGATTCCAAAAATTGTCAGCGCAGCTATTAAAAGTGGTATCAGCCCACAAGAAATTCAAATTCTTGCC
CCCATGTACCGCGGAGCAGCTGGAATTAATCGCCTTAATACGATTATCCAAGATTTGTTAAACCCACTCGGTGACCAATT
GTCATTTGCCTTTGGTGAGATGAATTTTCGTAAGGGAGACAAAGTTCTCCACCTCATCAACGACGCCGAACTCAATGTCT
TTAACGGTGATATCGGCTATATTACTGACCTTATTCCTGCCAAATACACCGAGTCTAAGCAAGACGAGCTGTTTATGTCT
TTTGATGGTACTGAAGTGAGCTATCCTCGTAACGAATGGCATAAAATCACACTGGCTTACGCCATGTCTATCCACAAATC
TCAAGGTAGCGAATTTCAGGTTGTTATCCTACCAATCACACGTCAGAGTCATCGTCTCTTGCAGCGTAACCTTATCTATA
CTGCCATTACACGCTCAAAAAGTAAGCTAGTCATGCTGGGAGAAATTGCTGCCTTTGACTACGCGATTAAAAACGAAGGT
GCTAAACGCAACACTTACCTCGTCGAGCGTTTCACAGGAGACGAAGAACTCCCTGAAATGGATTCTTCCGAGAACATCAC
TGATTCTGAAATTCAAGAACAAGAAACAACTAAAAGTATTCCTTCAAACTCTGAGGAAGAAAATTCGTCTAAAAAAGCTG
AACAGCTCAGCTTGGATATTGAGGAAGAACTTGAAACTGAAGAGCCAAAAATTTATCGCCTAACAGAAGAAAATATGGCA
TTTATCGATCCGATGATTGGCATTACCCAAATAGATATCGAACAATTTTTTAAACGTTCATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-635)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

AAA domain (AAA_30)

(331-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.895

92.683

0.398

Multiple sequence alignment