Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CJ8421_RS05315 Genome accession   NZ_CP005388
Coordinates   1004813..1005361 (+) Length   182 a.a.
NCBI ID   WP_002860190.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni CG8421     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 999813..1010361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ8421_RS05280 (CJ8421_05285) - 1000002..1000427 (+) 426 WP_002860188.1 GNAT family N-acetyltransferase -
  CJ8421_RS05285 - 1000491..1001112 (+) 622 Protein_1013 NAD(P)H-dependent oxidoreductase -
  CJ8421_RS05290 (CJ8421_05300) - 1001112..1001717 (+) 606 WP_002853045.1 NAD(P)H-dependent oxidoreductase -
  CJ8421_RS05295 (CJ8421_05305) pgsA 1001842..1002378 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CJ8421_RS05300 (CJ8421_05310) rseP 1002375..1003481 (+) 1107 WP_002852927.1 RIP metalloprotease RseP -
  CJ8421_RS05305 (CJ8421_05315) - 1003474..1004340 (+) 867 WP_002859152.1 VirK family antimicrobial peptide resistance protein -
  CJ8421_RS05310 (CJ8421_05320) rpsF 1004427..1004804 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  CJ8421_RS05315 (CJ8421_05325) ssb 1004813..1005361 (+) 549 WP_002860190.1 single-stranded DNA-binding protein Machinery gene
  CJ8421_RS05320 (CJ8421_05330) rpsR 1005372..1005632 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  CJ8421_RS05325 (CJ8421_05335) lon 1005692..1008067 (-) 2376 WP_002852988.1 endopeptidase La -
  CJ8421_RS05330 (CJ8421_05340) - 1008084..1008731 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  CJ8421_RS05335 (CJ8421_05345) fliW 1008892..1009281 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  CJ8421_RS05340 (CJ8421_05350) proC 1009281..1010012 (+) 732 WP_002860192.1 pyrroline-5-carboxylate reductase Machinery gene
  CJ8421_RS05345 (CJ8421_05355) ctsT 1010009..1010311 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20596.50 Da        Isoelectric Point: 5.0431

>NTDB_id=99757 CJ8421_RS05315 WP_002860190.1 1004813..1005361(+) (ssb) [Campylobacter jejuni subsp. jejuni CG8421]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=99757 CJ8421_RS05315 WP_002860190.1 1004813..1005361(+) (ssb) [Campylobacter jejuni subsp. jejuni CG8421]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363

Multiple sequence alignment