Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   ABDE97_RS17890 Genome accession   NZ_CP155455
Coordinates   3698879..3699619 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain 2024CK-00278     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3693879..3704619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDE97_RS17870 (ABDE97_17850) aroB 3694421..3695503 (-) 1083 WP_001194249.1 3-dehydroquinate synthase -
  ABDE97_RS17875 (ABDE97_17855) aroK 3695532..3696101 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ABDE97_RS17880 (ABDE97_17860) pilQ 3696113..3698278 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ABDE97_RS17885 (ABDE97_17865) pilP 3698341..3698868 (-) 528 WP_000695069.1 pilus assembly protein PilP Machinery gene
  ABDE97_RS17890 (ABDE97_17870) pilO 3698879..3699619 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABDE97_RS17895 (ABDE97_17875) pilN 3699616..3700257 (-) 642 WP_000201225.1 PilN domain-containing protein Machinery gene
  ABDE97_RS17900 (ABDE97_17880) pilM 3700257..3701315 (-) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene
  ABDE97_RS17905 (ABDE97_17885) ponA 3701477..3704032 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=996444 ABDE97_RS17890 WP_000076101.1 3698879..3699619(-) (pilO) [Acinetobacter baumannii strain 2024CK-00278]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=996444 ABDE97_RS17890 WP_000076101.1 3698879..3699619(-) (pilO) [Acinetobacter baumannii strain 2024CK-00278]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTATGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment