Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   EJN62_RS02425 Genome accession   NZ_LR130534
Coordinates   526153..526518 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa isolate paerg005     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 521153..531518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN62_RS02395 (BANRA_00456) pyrR 521775..522287 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  EJN62_RS02400 (BANRA_00457) ruvX 522399..522833 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  EJN62_RS02405 (BANRA_00458) - 522833..523402 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  EJN62_RS02410 (BANRA_00459) - 523451..524344 (-) 894 WP_003084580.1 TonB family protein -
  EJN62_RS02415 (BANRA_00460) gshB 524491..525444 (-) 954 WP_003100943.1 glutathione synthase -
  EJN62_RS02420 (BANRA_00461) pilG 525699..526106 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  EJN62_RS02425 (BANRA_00462) pilH 526153..526518 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  EJN62_RS02430 (BANRA_00463) - 526569..527105 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  EJN62_RS02435 (BANRA_00464) pilJ 527190..529238 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  EJN62_RS02440 (BANRA_00465) pilK 529299..530174 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=995602 EJN62_RS02425 WP_003084587.1 526153..526518(+) (pilH) [Pseudomonas aeruginosa isolate paerg005]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=995602 EJN62_RS02425 WP_003084587.1 526153..526518(+) (pilH) [Pseudomonas aeruginosa isolate paerg005]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364