Detailed information    

insolico Bioinformatically predicted

Overview


Name   comS   Type   Regulator
Locus tag   AAVB50_RS22000 Genome accession   NZ_CP154923
Coordinates   4128113..4128253 (-) Length   46 a.a.
NCBI ID   WP_010886404.1    Uniprot ID   A0AAX3RTW8
Organism   Bacillus subtilis strain FUA2233     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context


Location: 4123113..4133253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS21995 (AAVB50_21990) - 4126995..4128167 (-) 1173 Protein_4264 condensation domain-containing protein -
  AAVB50_RS22000 (AAVB50_21995) comS 4128113..4128253 (-) 141 WP_010886404.1 competence protein ComS Regulator
  AAVB50_RS22005 (AAVB50_22000) srfAB 4128297..4131389 (-) 3093 Protein_4266 surfactin non-ribosomal peptide synthetase SrfAB -

Sequence


Protein


Download         Length: 46 a.a.        Molecular weight: 5244.05 Da        Isoelectric Point: 9.2422

>NTDB_id=995572 AAVB50_RS22000 WP_010886404.1 4128113..4128253(-) (comS) [Bacillus subtilis strain FUA2233]
MNRSGKHLISSIILYPRPSGECISSISLDKQTQATTSPLYFCWREK

Nucleotide


Download         Length: 141 bp        

>NTDB_id=995572 AAVB50_RS22000 WP_010886404.1 4128113..4128253(-) (comS) [Bacillus subtilis strain FUA2233]
TTGAACCGATCAGGCAAGCATCTTATCAGCAGCATTATCCTGTATCCCCGGCCCAGCGGAGAATGTATATCCTCAATCAG
CTTGGACAAGCAAACACAAGCTACAACGTCCCCGCTGTACTTCTGCTGGAGGGAGAAGTAG

Domains


Predicted by InterproScan.

(1-44)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

100

100

1


Multiple sequence alignment