Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AAVB50_RS08285 Genome accession   NZ_CP154923
Coordinates   1556202..1556948 (+) Length   248 a.a.
NCBI ID   WP_168781167.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2233     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1551202..1561948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS08270 (AAVB50_08265) - 1551429..1551620 (-) 192 WP_003222590.1 hypothetical protein -
  AAVB50_RS08275 (AAVB50_08270) valS 1552068..1554710 (+) 2643 WP_345806491.1 valine--tRNA ligase -
  AAVB50_RS08280 (AAVB50_08275) folC 1554770..1556062 (+) 1293 WP_345806015.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  AAVB50_RS08285 (AAVB50_08280) comC 1556202..1556948 (+) 747 WP_168781167.1 A24 family peptidase Machinery gene
  AAVB50_RS08290 (AAVB50_08285) spoIIB 1557081..1558079 (+) 999 WP_345806016.1 SPOR domain-containing protein -
  AAVB50_RS08295 (AAVB50_08290) maf 1558231..1558800 (+) 570 WP_345806017.1 Maf family nucleotide pyrophosphatase -
  AAVB50_RS08300 (AAVB50_08295) radC 1558837..1559532 (+) 696 WP_015251546.1 DNA repair protein RadC -
  AAVB50_RS08305 (AAVB50_08300) mreB 1559624..1560637 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  AAVB50_RS08310 (AAVB50_08305) mreC 1560668..1561540 (+) 873 WP_003222609.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26517.10 Da        Isoelectric Point: 10.1313

>NTDB_id=995522 AAVB50_RS08285 WP_168781167.1 1556202..1556948(+) (comC) [Bacillus subtilis strain FUA2233]
MLFILFIFGLILGSFYYTAGRRIPLHLSIIAPRSSCSFCRRALTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGMSLELLTAVVFLSLLIIVAVTDLHYMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLALI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGSAAVLTGRLAKKQPLPFAPAIAAGSILTYLYGNSIIS
FYIKMASG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=995522 AAVB50_RS08285 WP_168781167.1 1556202..1556948(+) (comC) [Bacillus subtilis strain FUA2233]
ATGCTATTCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGACGCCGTATCCCCTTACATCT
ATCTATTATCGCGCCCCGTTCATCATGCTCGTTTTGCCGGCGGGCTTTGACCCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCGGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCATGTCGTTGGAATTGTTAACCGCTGTCGTGTTTCTCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTATATGCTGATTCCAAATCGAATATTGATTTTTTTCCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCTGCAGCCGGATTTCTATTTCTGGCTTTAATT
GCCGCAATCACCCATGGAGGTGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCGGCTGCCTTTTTCTTTTCTGTTTTGATAGGCGCATTGTACGGGTCGGCAGCTGTTCTGACTGGTAGACTCGCCA
AAAAGCAGCCGCTTCCCTTTGCCCCTGCAATAGCGGCAGGGAGTATTTTAACCTATTTATATGGGAACTCTATCATTTCG
TTTTATATCAAAATGGCATCGGGATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

93.548

100

0.935

Multiple sequence alignment