Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   AAYT23_RS02535 Genome accession   NZ_CP154877
Coordinates   488152..488418 (+) Length   88 a.a.
NCBI ID   WP_001811621.1    Uniprot ID   A0AAP5J8I9
Organism   Streptococcus pneumoniae strain 20234295     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 483152..493418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYT23_RS02515 (AAYT23_02495) - 483363..483872 (+) 510 WP_000619941.1 GNAT family N-acetyltransferase -
  AAYT23_RS02520 (AAYT23_02500) pheT 483949..486354 (+) 2406 WP_000961527.1 phenylalanine--tRNA ligase subunit beta -
  AAYT23_RS02525 (AAYT23_02505) - 486422..487423 (-) 1002 WP_000597970.1 endonuclease/exonuclease/phosphatase family protein -
  AAYT23_RS02530 (AAYT23_02510) - 487579..488067 (+) 489 Protein_497 transposase -
  AAYT23_RS02535 (AAYT23_02515) HI0659 488152..488418 (+) 267 WP_001811621.1 helix-turn-helix domain-containing protein Machinery gene
  AAYT23_RS02540 (AAYT23_02520) metE 488678..490927 (+) 2250 WP_000108270.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  AAYT23_RS02545 (AAYT23_02525) metF 490991..491857 (+) 867 WP_000089988.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9560.13 Da        Isoelectric Point: 4.8274

>NTDB_id=994438 AAYT23_RS02535 WP_001811621.1 488152..488418(+) (HI0659) [Streptococcus pneumoniae strain 20234295]
MEGCLSELFSKEEILESDMRVAIMSELIEARNKQGISQKKLEEVSGVSQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=994438 AAYT23_RS02535 WP_001811621.1 488152..488418(+) (HI0659) [Streptococcus pneumoniae strain 20234295]
TTGGAAGGATGTCTATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTAGCTATCATGAGCGAGTT
GATTGAAGCCAGAAATAAGCAAGGAATCAGTCAGAAAAAGCTAGAGGAAGTCAGTGGAGTGAGTCAGCCTGTTATAGCTA
GGATGGAGACAGGTAAGACTAGTCCACAGTTGGACACAGTCTTAAAAGTCCTAGCTAGTCTAGGAAAGACACTAGCAGTC
GTTCCACTTGAACAGGGGAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534

Multiple sequence alignment