Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   EW021_RS06820 Genome accession   NZ_LR130236
Coordinates   1309763..1310428 (-) Length   221 a.a.
NCBI ID   WP_047343325.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 5448 isolate 5448     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1304763..1315428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW021_RS06815 hpf 1309135..1309683 (-) 549 WP_002988974.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  EW021_RS06820 comFC/cflB 1309763..1310428 (-) 666 WP_047343325.1 ComF family protein Machinery gene
  EW021_RS06825 comFA/cflA 1310400..1311725 (-) 1326 WP_010922534.1 DEAD/DEAH box helicase Machinery gene
  EW021_RS06830 - 1311781..1312413 (+) 633 WP_009880468.1 YigZ family protein -
  EW021_RS06835 cysK 1312541..1313482 (+) 942 WP_010922535.1 cysteine synthase A -
  EW021_RS06840 - 1313500..1313877 (-) 378 WP_002991882.1 S1 RNA-binding domain-containing protein -
  EW021_RS06845 - 1313877..1315277 (-) 1401 WP_011285657.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25162.47 Da        Isoelectric Point: 9.6756

>NTDB_id=994140 EW021_RS06820 WP_047343325.1 1309763..1310428(-) (comFC/cflB) [Streptococcus pyogenes strain 5448 isolate 5448]
MICLLCQQISQTPISITEIIFLRRISSPICQQCQKSFQKIGKSVCATCCANSDIIACRDCLKWENKGYNVNHRSLYCYNA
AMKAYFSQYKFQGDYLLRKVFAVELADVITKYYKGYIPVPVPVSPGCFRERQFNQVSAILKAANVSYLSLFEKLDNTHQS
SRTKKERLLVEKSYRLLKVSNIPDKILIVDDIYTTGSTIIALRKQLAKVANSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=994140 EW021_RS06820 WP_047343325.1 1309763..1310428(-) (comFC/cflB) [Streptococcus pyogenes strain 5448 isolate 5448]
ATGATCTGTCTACTATGTCAACAAATTAGTCAAACACCAATAAGTATTACAGAAATCATCTTTTTAAGACGTATCTCTTC
ACCGATTTGTCAACAATGTCAAAAAAGCTTTCAAAAGATAGGAAAAAGTGTTTGTGCGACATGTTGTGCAAACTCAGATA
TAATAGCTTGTCGAGATTGTCTAAAATGGGAAAACAAAGGATACAATGTAAATCATAGAAGCTTATATTGTTATAATGCT
GCTATGAAAGCATACTTCAGTCAATATAAGTTTCAAGGAGACTATTTATTAAGAAAAGTTTTTGCAGTAGAACTTGCCGA
TGTTATCACCAAGTACTATAAAGGCTATATCCCAGTCCCGGTTCCTGTAAGTCCCGGTTGTTTTCGAGAAAGACAATTTA
ATCAAGTGAGCGCTATTCTTAAGGCAGCTAATGTTAGCTACCTTTCTCTTTTTGAAAAGCTAGATAATACTCACCAATCT
TCCAGAACAAAAAAAGAGAGATTATTAGTAGAAAAATCTTATCGACTACTAAAAGTATCAAACATTCCTGATAAAATCCT
TATAGTAGATGATATTTATACTACTGGTAGTACAATTATCGCTCTTAGAAAACAATTGGCTAAAGTAGCAAATAGTGACA
TTAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae D39

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae R6

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

41.176

100

0.412
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus mitis NCTC 12261

40.724

100

0.407