Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   EQB47_RS05795 Genome accession   NZ_LR129844
Coordinates   1075477..1075941 (-) Length   154 a.a.
NCBI ID   WP_001135764.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 180-15 isolate 180-15     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1070477..1080941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB47_RS05775 - 1071428..1072396 (-) 969 WP_000105360.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  EQB47_RS05780 pdrM 1072550..1073911 (-) 1362 WP_000278539.1 sodium-coupled multidrug efflux MATE transporter PdrM -
  EQB47_RS05785 - 1073922..1074182 (-) 261 WP_001105925.1 hypothetical protein -
  EQB47_RS05790 - 1074196..1075464 (-) 1269 WP_000924466.1 dihydroorotase -
  EQB47_RS05795 mutX 1075477..1075941 (-) 465 WP_001135764.1 NUDIX hydrolase Machinery gene
  EQB47_RS05800 - 1075951..1076604 (-) 654 WP_000401326.1 uracil-DNA glycosylase -
  EQB47_RS05805 - 1076740..1077387 (-) 648 WP_001809355.1 hypothetical protein -
  EQB47_RS05810 - 1077401..1078114 (-) 714 WP_000499429.1 YjjG family noncanonical pyrimidine nucleotidase -
  EQB47_RS05815 dhaM 1078573..1078941 (-) 369 WP_000443786.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  EQB47_RS12030 - 1078941..1079015 (-) 75 Protein_1106 dihydroxyacetone kinase subunit L -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17786.12 Da        Isoelectric Point: 4.2287

>NTDB_id=994009 EQB47_RS05795 WP_001135764.1 1075477..1075941(-) (mutX) [Streptococcus pneumoniae strain 180-15 isolate 180-15]
MPQLATICYIDNGKELLMLHRNKKPNDVHEGKWIGVGGKLERGETPQECAAREILEETGLKAKPVLKGVITFPEFTADLD
WYTYVFKVTEFEGDLIDCNEGTLEWVPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=994009 EQB47_RS05795 WP_001135764.1 1075477..1075941(-) (mutX) [Streptococcus pneumoniae strain 180-15 isolate 180-15]
ATGCCTCAGTTAGCGACGATTTGCTACATTGATAATGGGAAAGAACTGCTCATGCTCCATCGTAATAAGAAACCCAATGA
TGTCCATGAAGGGAAATGGATTGGTGTGGGTGGTAAGCTAGAGAGAGGAGAGACGCCCCAGGAATGCGCGGCGCGTGAAA
TCCTTGAAGAAACAGGGCTCAAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACAGCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGCGACTTGATTGACTGCAATGAGGGGACGCTAGAATGGGTTCC
CTATGACGAGGTTTTGAGCAAGCCGACTTGGGAAGGTGACCACACCTTTGTTGAGTGGCTTTTAGAGGATAAACCCTTCT
TTTCAGCCAAGTTTGTTTATGATGGGGATAAATTGTTGGATACCCAAGTTGATTTCTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

98.052

100

0.981