Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QMG88_RS18280 Genome accession   NZ_AP027052
Coordinates   3982631..3983734 (-) Length   367 a.a.
NCBI ID   WP_281828048.1    Uniprot ID   -
Organism   Vibrio nigripulchritudo strain TUMSAT-V.nig3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3977631..3988734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMG88_RS18250 (TUMSATVNIG3_35360) hemF 3978221..3979138 (-) 918 WP_281828045.1 oxygen-dependent coproporphyrinogen oxidase -
  QMG88_RS18255 (TUMSATVNIG3_35370) - 3979161..3979718 (-) 558 WP_223095383.1 L-threonylcarbamoyladenylate synthase -
  QMG88_RS18260 (TUMSATVNIG3_35380) purE 3979910..3980395 (+) 486 WP_223095385.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  QMG88_RS18265 (TUMSATVNIG3_35390) - 3980401..3981528 (+) 1128 WP_223095387.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  QMG88_RS18270 (TUMSATVNIG3_35400) - 3981574..3982143 (-) 570 WP_281828047.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  QMG88_RS18275 (TUMSATVNIG3_35410) - 3982155..3982628 (-) 474 WP_004406478.1 DUF494 family protein -
  QMG88_RS18280 (TUMSATVNIG3_35420) dprA 3982631..3983734 (-) 1104 WP_281828048.1 DNA-processing protein DprA Machinery gene
  QMG88_RS18285 (TUMSATVNIG3_35430) - 3983736..3984830 (-) 1095 WP_022597304.1 LysM peptidoglycan-binding domain-containing protein -
  QMG88_RS18290 (TUMSATVNIG3_35440) def 3984948..3985469 (+) 522 WP_004406486.1 peptide deformylase -
  QMG88_RS18295 (TUMSATVNIG3_35450) fmt 3985502..3986449 (+) 948 WP_281828049.1 methionyl-tRNA formyltransferase -
  QMG88_RS18300 (TUMSATVNIG3_35460) rsmB 3986536..3987816 (+) 1281 WP_281828050.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39382.74 Da        Isoelectric Point: 5.4040

>NTDB_id=99397 QMG88_RS18280 WP_281828048.1 3982631..3983734(-) (dprA) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
MTNNELRAWLTLSFTPQLGGQSLTRLLAIDSPVNILSSGPERWQAIGLKPKQIAYLQAQSHPEVDESLEWEAVSDSHHIL
TLLDTDYPPLLKEVPSPPTALFVKGDVSSLSAPQIAMVGSRNASIEGLQTAKAFAKDLSGNGLVVTSGLALGVDGYAHDG
ALEGGGKTVAVLGSGLECIYPARHRKLAARVVEQGALVSEFRPNTKPRPEHFPRRNRIISGLSVGVFVVEAAERSGSLIT
ARYAAEQGRDVFALPGSIHNPNARGGNALIKSGACLVQSSQDILQEVENLVSWSFSQQTSIFSEEAEQEELPFPELMANV
GIEATPVDILAERTHIPVHEVMMQLLELELSGHIVAVPGGYIRKGRG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=99397 QMG88_RS18280 WP_281828048.1 3982631..3983734(-) (dprA) [Vibrio nigripulchritudo strain TUMSAT-V.nig3]
ATGACGAACAATGAGTTACGAGCCTGGCTGACCTTAAGTTTCACCCCACAATTAGGCGGCCAGTCGTTGACTCGATTGCT
CGCTATTGATTCTCCCGTCAACATACTGTCTTCCGGTCCGGAGCGCTGGCAAGCCATCGGTCTTAAACCAAAACAGATCG
CTTATCTACAAGCTCAATCCCACCCAGAAGTGGATGAGAGTCTTGAGTGGGAGGCGGTTTCTGATTCCCACCACATTCTT
ACTTTGCTGGATACTGATTATCCACCTCTGTTGAAAGAAGTCCCTTCACCGCCCACCGCACTCTTTGTGAAAGGTGATGT
GTCGTCTTTGAGTGCACCACAAATTGCAATGGTGGGCAGTCGAAACGCCAGTATCGAAGGACTGCAAACCGCAAAAGCCT
TCGCTAAAGACCTATCAGGTAATGGGCTGGTTGTGACCAGCGGCCTGGCTTTGGGTGTAGATGGGTACGCTCATGATGGG
GCACTGGAAGGAGGTGGAAAAACTGTTGCCGTATTGGGCTCCGGGTTGGAGTGTATTTACCCTGCAAGGCATCGAAAGCT
CGCCGCCAGAGTTGTCGAGCAAGGGGCATTGGTGTCGGAATTTCGCCCGAACACCAAACCTCGTCCTGAACATTTTCCCC
GTCGTAACCGAATAATTAGTGGATTATCGGTAGGTGTATTTGTCGTAGAAGCGGCAGAGCGCAGTGGCTCACTCATTACT
GCCCGCTATGCCGCAGAGCAGGGGCGCGATGTTTTTGCCTTACCGGGCTCAATTCATAACCCCAATGCCCGAGGTGGTAA
TGCGTTGATCAAATCAGGTGCCTGCTTGGTTCAGTCCTCCCAAGATATCCTCCAGGAAGTTGAAAATTTAGTTTCTTGGT
CGTTTTCTCAACAAACATCTATATTTAGTGAAGAAGCCGAGCAAGAAGAATTGCCATTTCCCGAACTAATGGCTAACGTA
GGAATAGAAGCAACACCCGTTGATATTCTTGCAGAGCGGACCCATATACCTGTGCATGAAGTCATGATGCAACTACTGGA
ACTTGAGCTTTCAGGGCATATTGTTGCAGTACCTGGTGGCTATATTCGAAAGGGGAGGGGCTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-278)

DprA winged helix domain (DprA_WH)

(315-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

65.565

98.91

0.649
  dprA Vibrio cholerae strain A1552

58.76

100

0.594
  dprA Glaesserella parasuis strain SC1401

45.867

100

0.469
  dprA Neisseria meningitidis strain C311

38.75

100

0.422
  dprA Neisseria meningitidis MC58

38.75

100

0.422
  dprA Neisseria gonorrhoeae strain FA1090

38.191

100

0.414
  dprA Legionella pneumophila strain ERS1305867

50

81.744

0.409
  dprA Neisseria gonorrhoeae MS11

37.688

100

0.409
  dprA Haemophilus influenzae Rd KW20

42.733

93.733

0.401

Multiple sequence alignment