Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   H346_RS0102475 Genome accession   NZ_AUKZ01000006
Coordinates   18944..19717 (-) Length   257 a.a.
NCBI ID   WP_027969693.1    Uniprot ID   -
Organism   Streptococcus castoreus DSM 17536     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 13944..24717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H346_RS0102440 - 14445..14642 (-) 198 WP_027969688.1 DUF951 domain-containing protein -
  H346_RS10450 - 14733..15990 (-) 1258 Protein_13 IS3 family transposase -
  H346_RS0102465 dnaN 16063..17199 (-) 1137 WP_027969691.1 DNA polymerase III subunit beta -
  H346_RS0102470 dnaA 17356..18711 (-) 1356 WP_027969692.1 chromosomal replication initiator protein DnaA -
  H346_RS0102475 spo0J 18944..19717 (-) 774 WP_027969693.1 ParB/RepB/Spo0J family partition protein Regulator
  H346_RS0102480 htrA 19826..21055 (-) 1230 WP_027969694.1 S1C family serine protease Regulator
  H346_RS0102485 rlmH 21265..21744 (+) 480 WP_027969695.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29215.13 Da        Isoelectric Point: 10.2681

>NTDB_id=99397 H346_RS0102475 WP_027969693.1 18944..19717(-) (spo0J) [Streptococcus castoreus DSM 17536]
MTGILVQIPIEDIVANPYQPRIQFNQKELEDLANSIKENGLIQPIIVRKSEIFGYELVAGERRFKASKMAGLTKIPAIIK
KISTLESMQQAIVENLQRADLNAIEEAKAYRLLIEKNKVTHEEIAKYMGKSRSYISNILRLLQLPDNIIQSVEEGIISAG
HARALLTLTNSKEQTFYLHKIINDGLSVRQIEQIVKPKPDKKNQKKDKDIFVTSLERKLAKSLGLKVTLIFKTNNKGQVQ
LSFSNQEELNRIINKLL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=99397 H346_RS0102475 WP_027969693.1 18944..19717(-) (spo0J) [Streptococcus castoreus DSM 17536]
ATGACGGGAATATTGGTACAGATTCCGATTGAAGATATTGTTGCAAACCCTTATCAACCAAGGATTCAATTTAATCAAAA
AGAACTTGAAGATTTAGCAAATTCCATTAAAGAAAATGGACTCATTCAACCTATCATTGTTAGAAAATCTGAAATTTTTG
GCTATGAATTAGTTGCTGGTGAGAGACGATTTAAAGCTTCAAAAATGGCTGGTTTAACCAAAATTCCAGCCATTATCAAA
AAAATATCAACACTCGAGAGCATGCAACAAGCCATCGTTGAAAATCTACAACGTGCTGACTTAAACGCTATCGAAGAAGC
AAAAGCTTACCGATTACTAATTGAAAAAAATAAGGTAACTCATGAAGAGATTGCTAAATATATGGGAAAATCAAGATCCT
ACATTAGTAATATCTTACGTCTCTTACAACTTCCAGATAATATTATCCAATCAGTGGAAGAAGGAATTATTAGCGCTGGC
CACGCACGCGCTTTATTAACTTTGACCAATTCAAAAGAGCAAACTTTTTATCTTCATAAAATTATTAATGACGGTCTAAG
CGTTAGACAAATTGAACAAATTGTTAAGCCAAAACCCGATAAAAAAAATCAAAAAAAGGATAAAGATATTTTTGTCACTT
CATTAGAAAGAAAACTAGCAAAATCTCTCGGTTTAAAGGTAACTCTTATCTTTAAAACAAATAACAAGGGGCAAGTGCAA
CTGTCCTTTTCCAATCAAGAAGAATTGAACAGAATTATCAACAAACTTCTTTAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

57.812

99.611

0.576

Multiple sequence alignment