Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   TPELB_RS17485 Genome accession   NZ_CP154622
Coordinates   3601220..3603031 (-) Length   603 a.a.
NCBI ID   WP_343339569.1    Uniprot ID   -
Organism   Terrisporobacter petrolearius strain ELB     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3596220..3608031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TPELB_RS17455 (TPELB_34880) - 3596547..3597653 (+) 1107 WP_206925569.1 DEAD/DEAH box helicase -
  TPELB_RS17460 (TPELB_34890) - 3597694..3598050 (-) 357 WP_276628080.1 hypothetical protein -
  TPELB_RS17465 (TPELB_34900) - 3598073..3598519 (-) 447 WP_234874853.1 YaiI/YqxD family protein -
  TPELB_RS17470 (TPELB_34910) - 3598535..3599389 (-) 855 WP_206925567.1 anti-sigma factor domain-containing protein -
  TPELB_RS17475 (TPELB_34920) - 3599398..3600048 (-) 651 WP_206925566.1 RNA polymerase subunit sigma -
  TPELB_RS17480 (TPELB_34930) - 3600240..3601070 (-) 831 WP_206925565.1 aldo/keto reductase -
  TPELB_RS17485 (TPELB_34940) rcrQ 3601220..3603031 (-) 1812 WP_343339569.1 ABC transporter ATP-binding protein Regulator
  TPELB_RS17490 (TPELB_34950) - 3603066..3605369 (-) 2304 WP_074919831.1 ABC transporter ATP-binding protein -
  TPELB_RS17495 (TPELB_34960) - 3605398..3605865 (-) 468 WP_074919832.1 MarR family transcriptional regulator -
  TPELB_RS17500 (TPELB_34970) - 3606204..3606929 (+) 726 WP_206925564.1 hypothetical protein -
  TPELB_RS17505 (TPELB_34980) - 3607023..3607157 (-) 135 WP_245227437.1 hypothetical protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 67116.63 Da        Isoelectric Point: 6.2656

>NTDB_id=993818 TPELB_RS17485 WP_343339569.1 3601220..3603031(-) (rcrQ) [Terrisporobacter petrolearius strain ELB]
MGGPAMNGPVEKAKDFKGTMRTLMSYLAKYKLSIIIVFIFAIGSVTFSVIGPKILGKATTEIFNGLVGKVSGEGSGIDFE
AIKRILIVLVILYIVSAIFSFVQGYVMSGISQKVAYNLRDELVKKINRLPMKYFDTRTHGEVLSRFTNDIDTLAMSLNQS
LTQIITSVTTLVGVLIMMLTISVLMTVSALVVIPISLFIISFVIKKSQKYFKSQQEYLGNVNGQVEELYGGHTVVQAFNG
EEESIKEFNKINNKLYDSAWRAQFLSSIMQPIMMFVGNLSYVVVSILGGYLVIKNRIEVGDIQSFIQYVRSFNQPIAQMA
QISNQLQSTAAAAERVFEFLNEEEDVTVENPVSIEGLEGRIDFENVKFGYDKDRTIIKDFTAHVKPGQKVALVGPTGAGK
STMIKLLMRFYDVNSGAILVDGHNVKDFNRGELRELFGMVLQDTWLFSGSIKENIRYGRLNASDDEVINAAKAAHVHHFI
KTLPDGYNMLLNEESSNISQGQKQLLTIARAILADPKILILDEATSSVDTRTELLIQKAMDNLMEGRTSFVIAHRLSTIR
NADLILVINDGDIVEQGNHEELLAKDGFYANLYNSQFENKEAM

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=993818 TPELB_RS17485 WP_343339569.1 3601220..3603031(-) (rcrQ) [Terrisporobacter petrolearius strain ELB]
ATGGGTGGTCCTGCGATGAATGGACCAGTAGAAAAAGCTAAAGACTTCAAGGGTACAATGAGAACACTAATGTCTTACTT
GGCTAAATATAAATTATCAATAATAATCGTATTTATATTTGCTATAGGAAGTGTAACATTTTCAGTAATAGGACCTAAAA
TATTAGGTAAAGCTACAACCGAGATATTTAATGGTTTGGTTGGCAAAGTATCTGGAGAAGGTAGTGGAATAGATTTTGAA
GCTATAAAAAGAATATTAATAGTTTTAGTTATACTATATATAGTTAGTGCTATATTCTCATTTGTCCAAGGTTATGTAAT
GAGTGGTATTTCTCAAAAGGTAGCATATAACCTTAGAGATGAATTAGTGAAAAAAATAAATAGATTGCCTATGAAATATT
TTGACACAAGAACTCATGGGGAAGTATTATCAAGGTTTACAAATGATATAGACACTTTAGCAATGAGTTTAAATCAAAGT
TTAACACAAATAATAACCTCTGTTACTACTTTAGTAGGAGTATTAATAATGATGCTAACTATAAGTGTACTTATGACAGT
TAGTGCATTAGTGGTTATACCAATATCATTGTTTATAATTTCTTTTGTTATTAAAAAATCTCAAAAGTACTTTAAGAGCC
AACAAGAGTACTTAGGTAATGTAAATGGACAGGTGGAAGAATTATATGGTGGCCACACAGTAGTTCAAGCATTCAACGGA
GAAGAAGAATCTATAAAAGAATTCAATAAAATTAATAACAAACTATATGATTCGGCATGGAGAGCTCAATTTTTATCAAG
TATAATGCAACCTATAATGATGTTTGTAGGAAATCTAAGTTATGTTGTAGTTTCAATACTTGGTGGATATTTAGTTATAA
AAAATAGAATTGAAGTAGGAGATATACAGTCATTTATTCAATACGTAAGAAGTTTTAATCAACCAATAGCACAAATGGCT
CAAATATCAAATCAATTACAATCTACTGCAGCTGCAGCTGAGAGAGTATTTGAATTCCTAAATGAAGAAGAAGATGTGAC
AGTAGAAAATCCTGTAAGTATAGAAGGATTAGAAGGTAGAATTGATTTTGAAAATGTTAAGTTTGGATACGATAAAGACA
GAACTATAATTAAAGACTTTACAGCTCATGTAAAACCAGGACAAAAAGTTGCACTAGTTGGACCTACAGGAGCAGGTAAA
TCAACTATGATAAAATTGTTAATGAGATTCTACGATGTGAACTCTGGAGCAATTCTTGTAGATGGTCATAACGTTAAAGA
CTTCAATAGAGGAGAACTTAGAGAATTATTTGGAATGGTTCTTCAAGATACTTGGTTATTTAGTGGTTCAATAAAAGAAA
ATATTAGATATGGTAGATTAAATGCTAGTGATGATGAAGTGATAAATGCCGCTAAAGCAGCTCATGTTCATCATTTTATA
AAAACTTTACCAGATGGATATAATATGTTATTGAATGAAGAATCAAGTAATATATCTCAAGGTCAAAAACAATTATTAAC
TATAGCTCGTGCCATATTGGCAGACCCTAAAATACTAATCTTAGATGAAGCAACCAGTTCTGTTGATACAAGAACTGAAC
TTTTAATACAAAAAGCTATGGATAATTTAATGGAAGGAAGAACAAGTTTTGTAATTGCTCACAGATTATCAACTATAAGA
AATGCAGATTTAATATTAGTTATTAATGATGGGGATATTGTTGAACAAGGAAATCACGAAGAATTATTAGCAAAAGATGG
TTTCTATGCAAATCTATATAATTCACAATTTGAAAACAAAGAAGCTATGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(378-526)

ABC transporter transmembrane region (ABC_membrane)

(34-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.085

97.347

0.488

Multiple sequence alignment