Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AAHT65_RS03505 Genome accession   NZ_CP154443
Coordinates   667561..668958 (-) Length   465 a.a.
NCBI ID   WP_343310986.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SW     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 662561..673958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT65_RS03470 (AAHT65_03470) flgL 662745..663641 (-) 897 WP_088118067.1 flagellar hook-associated protein FlgL -
  AAHT65_RS03475 (AAHT65_03475) flgK 663653..665176 (-) 1524 WP_010790079.1 flagellar hook-associated protein FlgK -
  AAHT65_RS03480 (AAHT65_03480) - 665193..665675 (-) 483 WP_088118069.1 flagellar protein FlgN -
  AAHT65_RS03485 (AAHT65_03485) flgM 665691..665951 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAHT65_RS03490 (AAHT65_03490) - 666031..666450 (-) 420 WP_010790082.1 TIGR03826 family flagellar region protein -
  AAHT65_RS03495 (AAHT65_03495) comFC 666522..667244 (-) 723 WP_343310985.1 double zinc ribbon domain-containing protein Machinery gene
  AAHT65_RS03500 (AAHT65_03500) - 667208..667504 (-) 297 WP_010790084.1 late competence development ComFB family protein -
  AAHT65_RS03505 (AAHT65_03505) comFA 667561..668958 (-) 1398 WP_343310986.1 ATP-dependent helicase ComFA Machinery gene
  AAHT65_RS03510 (AAHT65_03510) - 669065..669907 (-) 843 WP_003326716.1 DegV family protein -
  AAHT65_RS03515 (AAHT65_03515) degU 670014..670703 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAHT65_RS03520 (AAHT65_03520) degS 670780..671943 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  AAHT65_RS03525 (AAHT65_03525) - 672161..672814 (+) 654 WP_003326713.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53086.72 Da        Isoelectric Point: 10.0844

>NTDB_id=993406 AAHT65_RS03505 WP_343310986.1 667561..668958(-) (comFA) [Bacillus atrophaeus strain SW]
MQTELKKKPLFSADLQQFLHQRHLLRTEIPFSEELINWHIEHGLISAEKSIIKNKKGYLCNRCGQNDKRYFSSYWSCSDE
KNQMYCRSCVMMGRVSENIFLYSWIKEVEASWQPIKLTWEGKLSLGQQKAADILIDAITKREELLIWAVCGAGKTEILFP
GIEFALNQGFRVCIATPRTDVVLELTPRLKTAFQTTKVSALYGGSEDKGSLSPLMISTTHQLLRYKEAFDVIIIDEVDAF
PYSADQTLQFAVQKARKKNSTLIYLSATPSKELKKKAHIGKLKSVRIPARHHRKPLPEPRFCWCGNWQKKLAGSKIPKQV
KIWVEQHVKEGRPVFLFVPSVSVLEKVTACFAGMRYRTAGVHAEDKNRKEKVQQFRDGRLDVLITTTILERGVTVPMVQT
GVLGAESPIFTESALVQIAGRTGRHKKYAQGDVIYFHFGKTKSMIDARNHINEMNKLARKNELID

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=993406 AAHT65_RS03505 WP_343310986.1 667561..668958(-) (comFA) [Bacillus atrophaeus strain SW]
ATGCAGACTGAGTTGAAAAAGAAACCTTTATTCTCTGCTGATCTGCAGCAGTTCCTTCATCAGCGCCACTTGCTTAGAAC
TGAAATCCCATTCTCTGAGGAACTTATCAACTGGCATATTGAGCATGGTCTTATTTCCGCTGAAAAATCAATCATCAAAA
ATAAAAAGGGTTATTTGTGTAACAGGTGCGGCCAAAATGATAAGCGGTATTTTTCCTCCTACTGGTCATGCTCAGATGAA
AAAAATCAAATGTATTGCCGTTCGTGTGTCATGATGGGAAGAGTAAGCGAGAACATTTTCTTATATTCATGGATAAAGGA
GGTGGAAGCAAGCTGGCAGCCTATAAAGCTTACTTGGGAAGGTAAACTCTCTCTTGGACAGCAAAAAGCCGCGGATATTT
TAATTGACGCGATAACTAAAAGGGAAGAGCTTCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACCGAAATATTATTCCCG
GGCATTGAGTTTGCGTTAAATCAGGGATTTCGCGTATGTATTGCAACACCGCGCACCGATGTCGTACTAGAGCTTACTCC
AAGGCTGAAAACCGCCTTTCAGACCACAAAGGTCTCAGCCCTTTACGGAGGGAGTGAAGATAAAGGGAGCTTGTCCCCGC
TGATGATTTCAACGACACATCAGCTATTACGTTACAAAGAAGCATTTGACGTCATCATCATAGATGAAGTTGATGCTTTT
CCTTATTCTGCTGATCAAACTCTCCAGTTTGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCATTTATTTAAGTGC
AACACCTTCCAAAGAATTAAAAAAGAAAGCACATATAGGGAAGTTAAAATCGGTTCGCATACCCGCAAGACACCATCGGA
AACCATTGCCTGAACCACGTTTTTGCTGGTGCGGAAACTGGCAAAAAAAATTAGCCGGAAGCAAAATTCCGAAACAGGTG
AAAATATGGGTAGAACAGCATGTGAAAGAAGGCAGACCTGTTTTTTTATTTGTGCCGTCTGTTTCCGTTTTAGAGAAGGT
TACTGCCTGTTTCGCCGGCATGAGATATCGGACAGCGGGTGTGCATGCGGAAGATAAGAACCGAAAAGAGAAAGTGCAGC
AATTCAGGGACGGCCGGCTTGATGTATTAATCACAACGACCATATTAGAAAGAGGAGTTACTGTTCCAATGGTGCAGACT
GGCGTATTGGGAGCTGAATCGCCTATATTTACTGAGAGTGCACTCGTCCAAATCGCCGGAAGGACAGGGCGGCATAAAAA
ATATGCTCAGGGTGACGTCATATATTTTCACTTTGGAAAAACAAAGAGTATGATAGATGCCAGAAATCATATAAACGAAA
TGAATAAATTGGCAAGAAAAAACGAATTAATAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(123-270)

Helicase conserved C-terminal domain (Helicase_C)

(326-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

76.559

100

0.766

Multiple sequence alignment