Detailed information NTG0991944

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAHY66_RS21280
• Genome accession: NZ_CP153710
• Coordinates: 4305279..4306079 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn1241
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4300279..4311079

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAHY66_RS21245 (AAHY66_21215)	gspH	4300435..4300950 (+)	516	WP_004194939.1	type II secretion system minor pseudopilin GspH	-
AAHY66_RS21250 (AAHY66_21220)	gspI	4300947..4301312 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
AAHY66_RS21255 (AAHY66_21225)	gspJ	4301309..4301905 (+)	597	WP_004178612.1	type II secretion system minor pseudopilin GspJ	-
AAHY66_RS21260 (AAHY66_21230)	gspK	4301902..4302888 (+)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
AAHY66_RS21265 (AAHY66_21235)	gspL	4302875..4304068 (+)	1194	WP_353341760.1	type II secretion system protein GspL	-
AAHY66_RS21270 (AAHY66_21240)	-	4304061..4304546 (+)	486	WP_004151943.1	type II secretion system protein M	-
AAHY66_RS21275 (AAHY66_21245)	-	4304536..4305282 (+)	747	WP_004145897.1	type II secretion system protein N	-
AAHY66_RS21280 (AAHY66_21250)	pilD	4305279..4306079 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
AAHY66_RS21285 (AAHY66_21255)	hrpB	4306127..4308556 (-)	2430	WP_289500108.1	ATP-dependent helicase HrpB	-
AAHY66_RS21290 (AAHY66_21260)	thpR	4308629..4309165 (+)	537	WP_048291246.1	RNA 2',3'-cyclic phosphodiesterase	-
AAHY66_RS21295 (AAHY66_21265)	sfsA	4309165..4309881 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
AAHY66_RS21300 (AAHY66_21270)	dksA	4310044..4310499 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=991944 AAHY66_RS21280 WP_002888947.1 4305279..4306079(+) (pilD) [Klebsiella pneumoniae strain Kpn1241]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=991944 AAHY66_RS21280 WP_002888947.1 4305279..4306079(+) (pilD) [Klebsiella pneumoniae strain Kpn1241]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTAGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425