Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   SRS_RS02150 Genome accession   NZ_LN626917
Coordinates   437901..438314 (+) Length   137 a.a.
NCBI ID   WP_045178630.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 432901..443314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRS_RS02105 - 433072..433356 (+) 285 WP_045178623.1 hypothetical protein -
  SRS_RS02110 - 433353..433994 (+) 642 WP_045178624.1 pathogenicity island protein -
  SRS_RS02115 - 434511..434852 (+) 342 WP_001190600.1 hypothetical protein -
  SRS_RS02120 - 434864..435442 (+) 579 WP_045178626.1 hypothetical protein -
  SRS_RS02125 - 435460..435678 (+) 219 WP_000448775.1 capsid morphogenesis B protein -
  SRS_RS02130 - 435729..436256 (+) 528 WP_045178628.1 spore coat protein -
  SRS_RS02135 - 436259..436600 (+) 342 WP_031783388.1 hypothetical protein -
  SRS_RS02140 - 436597..437166 (+) 570 WP_001293074.1 terminase small subunit -
  SRS_RS02145 - 437391..437798 (-) 408 WP_045178629.1 alkylhydroperoxidase -
  SRS_RS02150 lrpC 437901..438314 (+) 414 WP_045178630.1 Lrp/AsnC family transcriptional regulator Machinery gene
  SRS_RS02155 - 439145..439681 (-) 537 WP_000551644.1 hypothetical protein -
  SRS_RS14830 - 440073..440778 (-) 706 Protein_428 type II toxin-antitoxin system PemK/MazF family toxin -
  SRS_RS15785 - 441285..441398 (+) 114 Protein_429 pathogenicity island protein -
  SRS_RS02170 - 441923..442249 (-) 327 WP_045178631.1 IS3 family transposase -
  SRS_RS02175 - 442507..442659 (-) 153 WP_000248838.1 hypothetical protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 16202.63 Da        Isoelectric Point: 6.3646

>NTDB_id=990925 SRS_RS02150 WP_045178630.1 437901..438314(+) (lrpC) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
MDDLINRKIIDTLLNNSRIPINELSKEVNLSAPAVRERLNKLEERGIIKDYTINIDYKKLGYDVEIFIELTIKNNRYKDF
KYFISKQDNVEFCYRVSGEACFVFKVWLENMNAAETFVDNLQSYGYTKCQFIFSKVV

Nucleotide


Download         Length: 414 bp        

>NTDB_id=990925 SRS_RS02150 WP_045178630.1 437901..438314(+) (lrpC) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
ATGGATGACTTAATAAATAGAAAAATAATCGATACTTTGCTAAATAACAGTAGAATTCCTATTAATGAATTAAGTAAGGA
AGTGAATTTATCGGCTCCAGCTGTAAGAGAAAGGTTAAATAAACTTGAAGAAAGAGGTATTATTAAAGATTACACAATAA
ACATTGATTACAAAAAATTAGGATATGATGTAGAAATATTTATAGAGTTAACTATTAAAAATAATCGATACAAAGATTTT
AAATATTTTATATCCAAGCAGGATAATGTAGAATTTTGCTATCGAGTATCTGGAGAAGCGTGTTTTGTATTTAAGGTTTG
GTTGGAGAATATGAATGCAGCGGAAACGTTTGTAGATAATTTACAATCATATGGTTATACAAAATGTCAGTTTATTTTTT
CGAAAGTTGTTTGA

Domains

Predicted by InterProScan.

Winged helix-turn-helix DNA-binding (HTH_24)

(3-49)

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(68-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

41.791

97.81

0.409