Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   HMPREF9318_RS08840 Genome accession   NZ_KB373319
Coordinates   189217..189675 (+) Length   152 a.a.
NCBI ID   WP_006738845.1    Uniprot ID   G5KE77
Organism   Streptococcus urinalis FB127-CNA-2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 184217..194675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9318_RS08810 (HMPREF9318_01765) - 184416..185450 (+) 1035 WP_006740203.1 sensor histidine kinase -
  HMPREF9318_RS08815 (HMPREF9318_01766) - 185513..186262 (-) 750 WP_006740264.1 AraC family transcriptional regulator -
  HMPREF9318_RS08820 (HMPREF9318_01767) - 186378..187112 (+) 735 WP_006738834.1 SDR family oxidoreductase -
  HMPREF9318_RS08825 (HMPREF9318_01768) - 187125..187964 (+) 840 WP_006739437.1 SDR family NAD(P)-dependent oxidoreductase -
  HMPREF9318_RS08830 (HMPREF9318_01769) - 188066..188395 (+) 330 WP_006740728.1 PadR family transcriptional regulator -
  HMPREF9318_RS08835 (HMPREF9318_01770) - 188382..188933 (+) 552 WP_006740374.1 DUF2812 domain-containing protein -
  HMPREF9318_RS08840 (HMPREF9318_01771) rcrR 189217..189675 (+) 459 WP_006738845.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  HMPREF9318_RS08845 (HMPREF9318_01772) rcrP 189675..191477 (+) 1803 WP_006739455.1 ABC transporter ATP-binding protein Regulator
  HMPREF9318_RS08850 (HMPREF9318_01773) rcrQ 191467..193218 (+) 1752 WP_006739588.1 ABC transporter ATP-binding protein Regulator
  HMPREF9318_RS08855 (HMPREF9318_01774) - 193234..193596 (-) 363 WP_006740096.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17887.58 Da        Isoelectric Point: 8.8617

>NTDB_id=990740 HMPREF9318_RS08840 WP_006738845.1 189217..189675(+) (rcrR) [Streptococcus urinalis FB127-CNA-2]
MANAMESGFRELKNFINEVEQFIYEEAKHFDVEHLGGPQGFVIMYLLENPDKDLSFKDVESHLKISKSVTSNLIRRMERN
GFVEVQISKKDKRVKHICLTDFGRGKADQLKQYLDHIHDVFLKDITKEDAEITRKVLFTLKTNIKNEMKRRN

Nucleotide


Download         Length: 459 bp        

>NTDB_id=990740 HMPREF9318_RS08840 WP_006738845.1 189217..189675(+) (rcrR) [Streptococcus urinalis FB127-CNA-2]
ATGGCAAATGCTATGGAATCAGGCTTTCGAGAATTAAAAAATTTTATCAACGAAGTTGAACAATTTATCTATGAAGAGGC
AAAACATTTTGATGTTGAACATCTAGGTGGCCCTCAAGGTTTTGTTATTATGTACTTACTCGAAAATCCTGACAAAGATT
TATCGTTTAAAGATGTCGAATCACATCTGAAAATTTCGAAGTCTGTTACTTCAAATCTTATAAGGCGTATGGAGCGTAAT
GGTTTTGTAGAAGTTCAGATTTCAAAAAAAGATAAACGTGTCAAACACATCTGTTTAACGGATTTTGGAAGAGGAAAAGC
TGACCAGCTTAAGCAATATTTAGATCATATTCATGATGTTTTTCTTAAAGATATTACTAAAGAAGATGCTGAAATTACAA
GGAAGGTACTTTTTACTCTCAAAACAAATATTAAGAATGAAATGAAAAGGAGAAACTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(37-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KE77

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

47.143

92.105

0.434