Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   GBSCOH1_RS04370 Genome accession   NZ_HG939456
Coordinates   835773..839006 (+) Length   1077 a.a.
NCBI ID   WP_000772305.1    Uniprot ID   -
Organism   Streptococcus agalactiae COH1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 830773..844006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBSCOH1_RS04355 - 831645..832165 (+) 521 Protein_782 GNAT family N-acetyltransferase -
  GBSCOH1_RS04360 (GBSCOH1_0798) pheT 832219..834624 (+) 2406 WP_000961583.1 phenylalanine--tRNA ligase subunit beta -
  GBSCOH1_RS04365 (GBSCOH1_0799) - 834693..835595 (-) 903 WP_000686762.1 neutral zinc metallopeptidase -
  GBSCOH1_RS04370 (GBSCOH1_0800) rexB 835773..839006 (+) 3234 WP_000772305.1 ATP-dependent nuclease subunit B Machinery gene
  GBSCOH1_RS04375 (GBSCOH1_0801) rexA 838996..842619 (+) 3624 WP_000143239.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  GBSCOH1_RS04380 (GBSCOH1_0802) - 842632..843549 (+) 918 WP_000634649.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 1077 a.a.        Molecular weight: 123954.65 Da        Isoelectric Point: 5.2243

>NTDB_id=989867 GBSCOH1_RS04370 WP_000772305.1 835773..839006(+) (rexB) [Streptococcus agalactiae COH1]
MKLLYTDINHDMTEILVNQAAHAAEAGWRIFYIAPNSLSFEKERAVLETLPQEASFAITITRFAQLARYFTLNQPNQKES
LNDIGLAMIFYRALASFEDGQLKVFGRLKQDASFISQLVDLYKELQTANLSILDLKYLHSPEKFEDLLAIFLVVSDLLRE
GEYDNQSKIAFFTEQVRSGQLDVDLKNTILIVDGFTRFSAEEEALIKSLSSRCQEIIIGAYASQKAYKTNFTNGNIYSAG
VDFLRYLATTFQTKPEFILSKWESKSGFEMISKNIEGKHDFTNSSHILDDTAKDCITIWECINQKDEVEHVARAIRQKLY
QGYRYKDILVLLGDVDSYKLQLSKIFEQYDIPYYFGKAETMAAHPLVHFMDSLSRIKRYRFRAEDVLNLFKTGIYGEIGQ
DDLDYFEAYISYADIKGPKKFFTDFVVGAKKFDLGRLNTIRQSLLTPLESFVKTKKQDGIKTLNQFMFFLTQVGLSDNLS
RLVGQMSENEQEKHQEVWKTFTDILEQFQTIFGQEKLNLDEFLSLLNSGMMQAEYRMVPATVDVVTVKSYDLVEPHSNQF
VYALGMTQSHFPKIAQNKSLISDIERQLINDANDTDGHFDIMTRENLKKNHFAALSLFNAAKQALVLTIPQLLNESEDQM
SPYLVELRDIGVPFNHKGRQSLKEEADNIGNYKALLSRVVDLYRSAIDKEMTKEEQTFWSVAVRYLRRQLTSKGIEIPII
TDSLDTVTVSSDVMTRRFPEDHPLKLSSSALTTFYNNQYKYFLQYVLGLEEQDSIHPDMRHHGTYLHRVFEILMKNQGIE
SFEEKLNSAINKTNQEDVFKSLYSEDAESRYSLEILEDIARATATILRQDSQMTVESEEERFELMIDNTIKINGIIDRID
RLSDGSLGVVDYKSSAQKFDIQKFYNGLSPQLVTYIDAISRDKEVEQKPPIFGAMYLHMQEPRQDLSKIKNLDDLVTKNH
QALTYKGLFSEAEKEFLANGKYHLKDSLYSEAEIAILQAHNQSLYKKASETIKSGKFLINPYTEDAKTVDGDQFKSITGF
EADRHMARARALYKLPAKEKRQGFLTLMQQEEENDDL

Nucleotide


Download         Length: 3234 bp        

>NTDB_id=989867 GBSCOH1_RS04370 WP_000772305.1 835773..839006(+) (rexB) [Streptococcus agalactiae COH1]
ATGAAATTACTTTATACTGATATTAATCATGATATGACAGAAATCTTAGTCAATCAGGCCGCGCATGCTGCTGAAGCTGG
ATGGCGTATTTTTTATATTGCTCCAAACTCTTTATCTTTTGAAAAGGAGCGTGCAGTATTAGAGACCCTTCCTCAAGAAG
CCTCTTTTGCTATTACAATTACTCGCTTTGCTCAATTGGCACGTTATTTTACTTTAAACCAGCCTAATCAAAAAGAAAGT
TTAAACGATATTGGATTAGCAATGATCTTTTATCGTGCTTTAGCAAGTTTTGAAGATGGACAATTAAAAGTTTTTGGACG
ATTGAAGCAAGATGCTTCCTTTATCAGTCAATTGGTAGACCTATACAAAGAATTGCAGACAGCAAATCTGAGTATTTTAG
ATTTAAAATATTTACATTCTCCTGAAAAATTTGAAGATCTATTAGCTATTTTTCTAGTGGTTTCAGATCTTTTAAGAGAA
GGAGAATACGACAATCAATCTAAAATTGCCTTTTTTACAGAACAAGTAAGGTCAGGACAGCTAGATGTGGATTTAAAGAA
CACTATCCTTATAGTCGATGGTTTTACCCGTTTCTCAGCTGAAGAAGAAGCTTTAATTAAAAGTCTGAGTTCACGTTGTC
AAGAGATTATCATCGGAGCTTATGCTAGCCAAAAAGCGTATAAGACTAACTTTACCAATGGAAATATTTATTCTGCAGGG
GTTGATTTTTTAAGATATCTAGCAACGACATTTCAAACAAAACCAGAATTTATCTTGTCTAAGTGGGAAAGTAAGTCTGG
TTTTGAAATGATTTCGAAAAATATCGAAGGTAAACATGATTTTACAAATAGTAGTCACATTTTAGACGACACTGCTAAAG
ATTGTATAACAATTTGGGAGTGCATTAATCAAAAAGATGAAGTGGAACATGTGGCTAGAGCTATACGTCAGAAACTTTAT
CAGGGATATCGCTACAAAGATATTTTAGTTTTACTAGGAGATGTAGATAGTTATAAACTACAATTAAGTAAGATTTTTGA
ACAGTATGATATTCCTTATTATTTCGGTAAAGCTGAAACAATGGCTGCGCACCCTTTAGTTCATTTTATGGATTCCTTGT
CGCGAATAAAACGTTATCGATTTAGAGCTGAAGATGTTTTAAATCTTTTTAAGACAGGTATTTATGGAGAGATTGGTCAA
GATGATTTAGATTATTTTGAAGCTTATATCTCATATGCAGATATTAAAGGTCCTAAGAAGTTCTTTACAGATTTTGTTGT
GGGGGCTAAAAAATTTGATTTAGGGCGTCTTAACACTATTCGTCAGTCCCTCCTTACTCCACTGGAAAGTTTTGTTAAAA
CGAAAAAACAAGACGGTATAAAAACACTCAACCAATTCATGTTTTTCCTTACTCAGGTAGGTTTGAGTGACAATTTATCG
CGATTAGTTGGTCAAATGTCTGAAAATGAACAAGAAAAACATCAAGAAGTTTGGAAAACATTTACAGATATTTTAGAGCA
GTTTCAAACAATATTTGGTCAAGAAAAATTAAATTTAGACGAATTTTTATCGTTATTAAATTCAGGTATGATGCAAGCCG
AGTATCGTATGGTCCCTGCTACTGTTGATGTGGTTACTGTTAAGTCTTACGACTTGGTAGAACCACATAGTAATCAATTT
GTCTATGCCCTAGGCATGACACAATCACATTTTCCAAAGATTGCTCAAAACAAATCTTTAATATCTGATATTGAACGTCA
GCTTATAAATGATGCCAATGACACTGATGGTCATTTTGACATTATGACGCGAGAAAATTTGAAGAAAAACCATTTTGCTG
CTCTCTCTCTTTTTAATGCTGCTAAACAAGCATTAGTGTTGACTATACCACAATTATTGAATGAGTCTGAAGATCAGATG
TCACCATATCTTGTCGAACTAAGAGATATAGGTGTTCCTTTTAATCATAAAGGACGCCAATCGTTAAAAGAAGAAGCTGA
TAATATTGGGAATTACAAAGCTTTATTATCGCGTGTTGTTGACTTGTATCGCTCTGCTATTGACAAAGAGATGACTAAAG
AAGAACAAACTTTTTGGTCAGTTGCTGTTCGTTATTTGCGTCGTCAATTAACTTCTAAAGGGATCGAGATACCAATAATT
ACAGATAGTCTTGATACTGTGACAGTTTCATCAGATGTGATGACCAGACGCTTCCCAGAAGATCACCCACTTAAATTATC
CTCATCTGCTTTGACAACTTTTTATAATAATCAATATAAGTATTTTTTACAATATGTGTTAGGTTTGGAAGAACAAGACT
CAATTCATCCAGATATGCGGCACCACGGAACGTATCTTCATCGTGTTTTTGAAATTCTGATGAAAAACCAAGGGATAGAA
TCTTTTGAAGAGAAACTCAACTCTGCAATTAATAAAACCAATCAAGAAGATGTTTTCAAATCCTTGTATTCAGAAGATGC
AGAAAGTCGTTATTCTTTAGAAATTTTAGAAGATATCGCGCGTGCAACTGCAACCATATTACGACAAGATAGTCAGATGA
CTGTTGAAAGTGAAGAAGAACGATTTGAACTAATGATTGATAATACTATAAAAATTAACGGTATTATTGACCGTATCGAT
CGTTTATCTGATGGTTCTTTGGGTGTCGTGGACTATAAATCAAGCGCTCAAAAATTCGATATCCAAAAATTTTATAACGG
TCTAAGTCCACAATTAGTCACCTACATTGATGCTATCAGTCGTGACAAGGAAGTTGAACAAAAACCACCGATTTTTGGAG
CTATGTACTTACATATGCAAGAACCTAGACAAGACTTGTCTAAAATTAAAAATTTAGATGATTTAGTAACAAAAAATCAT
CAAGCTTTAACTTATAAAGGATTATTTTCAGAAGCCGAAAAAGAATTCTTAGCAAATGGGAAATACCATCTCAAAGATTC
CCTTTATTCAGAGGCTGAAATTGCTATTTTACAAGCACATAATCAATCGCTTTACAAAAAAGCATCTGAGACTATTAAGT
CAGGTAAGTTTTTGATCAATCCATATACAGAAGATGCTAAAACAGTTGACGGTGATCAGTTTAAGAGTATTACGGGGTTC
GAGGCGGATAGGCATATGGCACGTGCCAGAGCGCTTTATAAATTACCTGCTAAGGAAAAACGTCAAGGTTTCTTAACATT
AATGCAGCAAGAGGAGGAAAATGATGACCTTTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(746-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.03

99.907

0.43