Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   ACNR93_RS08065 Genome accession   NZ_CP184736
Coordinates   1631213..1633675 (+) Length   820 a.a.
NCBI ID   WP_420543541.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1626213..1638675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS08045 (ACNR93_08045) - 1628609..1629157 (-) 549 WP_027968361.1 CvpA family protein -
  ACNR93_RS08050 (ACNR93_08050) - 1629163..1629471 (-) 309 WP_004233227.1 hypothetical protein -
  ACNR93_RS08055 (ACNR93_08055) rnhC 1629592..1630491 (+) 900 WP_420543540.1 ribonuclease HIII -
  ACNR93_RS08060 (ACNR93_08060) lepB 1630507..1631100 (+) 594 WP_033153332.1 signal peptidase I -
  ACNR93_RS08065 (ACNR93_08065) recD/recD2/recDB 1631213..1633675 (+) 2463 WP_420543541.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACNR93_RS08070 (ACNR93_08070) - 1633917..1634411 (+) 495 WP_074567303.1 hypothetical protein -
  ACNR93_RS08075 (ACNR93_08075) dinB 1634461..1635558 (-) 1098 WP_021143134.1 DNA polymerase IV -
  ACNR93_RS08080 (ACNR93_08080) pflB 1635781..1638105 (+) 2325 WP_074480662.1 formate C-acetyltransferase -
  ACNR93_RS08085 (ACNR93_08085) - 1638166..1638603 (+) 438 WP_420543542.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 820 a.a.        Molecular weight: 92413.42 Da        Isoelectric Point: 4.3489

>NTDB_id=988928 ACNR93_RS08065 WP_420543541.1 1631213..1633675(+) (recD/recD2/recDB) [Streptococcus equinus strain NM-2-29]
MEYFFSGIVERIIFENASNFFKIVLLEIEDTNSDFDDFEIIVTGTMAEIIEGENYTFWGELTQHPKYGEQLKLTRYERSK
PSSSGLIKYFSSEHFKGIGKKTAEKIVQLYGEDTIDKILEDPSKLDSISGLSKENRDNFVAKLKLNYGTEQILAKLAEYG
LTNRVAFEIFNQYKEESLDIIQENPYQLVEDIQGIGFKIADQLAEQLGIEADSPQRFRAALVHTLFELSVENGDTYVEAR
DLLENAITILEEARQIELDPAAVAKELSTLIAEDKVQNIGTKIFDNTLFYAEAGIKKHLTRILDTPLSKQFSAEELEEEI
AEVEENFGISYDQVQKDAIKNALQSKVFILTGGPGTGKTTVINGLIETYAALHRIDLEKKDIPIILAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMDDYLDCDLIIIDEFSMVDTWLANQLFSSISSNTQVIIVGDSDQLPSVGPGQVLADLL
KIKELPQLALTKIFRQSEDSTIVTLANQMRQGILPADFTQKKADRSYFEASAQYIPEMIPKIVSAAIKSGISPQEIQILA
PMYRGAAGINRLNTIIQDLLNPLGDQLSFAFGEMNFRKGDKVLHLINDAELNVFNGDIGYITDLIPAKYTESKQDELFMS
FDGTEVSYPRNEWHKITLAYAMSIHKSQGSEFQVVILPITRQSHRLLQRNLIYTAITRSKSKLVMLGEIAAFDYAIKNEG
AKRNTYLVERFTGDEELPEIDSSESITDSEIQEQETVKSAPSNFEEENSSKKAEQLSLDIEEELETEEPKIYRLTEENMA
FIDPMIGITQEDIEQFFKRS

Nucleotide


Download         Length: 2463 bp        

>NTDB_id=988928 ACNR93_RS08065 WP_420543541.1 1631213..1633675(+) (recD/recD2/recDB) [Streptococcus equinus strain NM-2-29]
ATGGAATACTTCTTTTCTGGCATTGTTGAGCGTATTATTTTTGAAAATGCCAGTAACTTTTTTAAAATCGTACTACTCGA
AATCGAAGATACTAACTCTGATTTCGATGATTTTGAAATCATTGTCACAGGGACAATGGCTGAAATCATTGAAGGAGAAA
ATTATACTTTCTGGGGTGAATTGACCCAGCATCCAAAATACGGTGAGCAGCTTAAACTCACGCGCTACGAGCGTTCAAAG
CCAAGCTCATCTGGATTGATTAAATATTTTTCAAGCGAGCACTTTAAAGGGATTGGTAAAAAAACTGCTGAAAAAATCGT
GCAGCTCTACGGCGAAGACACCATCGATAAAATCCTAGAAGACCCAAGTAAACTCGACAGTATTTCAGGACTTTCTAAGG
AAAATCGTGATAATTTTGTTGCCAAATTAAAACTCAATTATGGTACGGAGCAAATCCTTGCCAAACTTGCTGAGTATGGG
TTGACTAACCGTGTGGCTTTTGAGATTTTTAACCAGTACAAAGAAGAAAGCCTTGATATTATCCAAGAAAATCCTTATCA
ACTCGTTGAAGACATCCAAGGAATTGGTTTTAAAATCGCTGACCAACTGGCTGAGCAGTTAGGCATTGAAGCAGATTCTC
CACAACGTTTTCGTGCGGCACTTGTCCACACATTATTCGAACTTTCTGTGGAAAACGGCGATACTTATGTCGAGGCGCGT
GATTTATTAGAAAATGCCATCACTATTCTTGAAGAAGCACGACAAATCGAACTTGACCCCGCAGCTGTTGCTAAAGAGTT
ATCAACACTTATTGCTGAAGACAAGGTGCAGAATATCGGTACTAAGATTTTTGACAACACGCTCTTTTATGCTGAAGCAG
GTATCAAAAAACATTTGACGCGTATCCTTGATACCCCACTGTCTAAGCAATTTTCAGCCGAAGAGCTGGAAGAAGAAATC
GCTGAAGTCGAAGAAAATTTTGGGATTTCTTATGACCAAGTGCAAAAAGATGCCATCAAAAATGCCCTGCAAAGCAAAGT
CTTTATCCTAACCGGGGGACCAGGGACAGGAAAAACAACCGTTATTAACGGTTTAATCGAGACTTATGCTGCTCTTCACC
GCATTGACCTTGAGAAAAAAGATATCCCAATCATTCTAGCAGCACCGACTGGTCGTGCAGCCCGTCGTATGAACGAATTG
ACTGGCTTACCAAGTGCCACGATTCACCGCCATCTTGGTTTAAATGGCGATAATGACTACCAAGCTATGGATGACTATCT
TGATTGTGACTTGATTATCATCGATGAGTTTTCAATGGTCGATACATGGCTTGCTAACCAACTATTTAGCTCTATTTCAT
CAAATACTCAAGTTATCATCGTCGGAGATAGCGACCAATTGCCTTCGGTAGGACCTGGACAAGTTTTGGCAGATTTATTG
AAAATCAAAGAATTACCGCAGTTAGCACTGACAAAAATCTTTAGACAGTCCGAAGATTCAACTATCGTTACTTTAGCCAA
TCAAATGAGACAAGGCATCTTGCCAGCTGATTTCACACAAAAAAAAGCTGACCGCTCTTATTTTGAAGCTAGCGCCCAAT
ACATTCCTGAGATGATTCCAAAGATTGTCAGCGCAGCTATTAAAAGTGGTATCAGCCCACAAGAAATTCAAATTCTTGCC
CCCATGTACCGCGGAGCAGCTGGGATTAATCGCCTTAATACGATTATCCAAGATTTGTTAAACCCACTCGGTGACCAATT
GTCATTTGCCTTTGGTGAGATGAATTTCCGTAAGGGAGACAAAGTTCTCCACCTCATCAACGATGCCGAACTCAATGTCT
TTAACGGTGATATCGGCTATATTACTGACCTTATTCCTGCCAAATACACCGAGTCTAAGCAAGACGAGCTGTTTATGTCC
TTTGATGGTACTGAAGTGAGCTATCCTCGTAACGAATGGCATAAAATCACACTGGCTTACGCCATGTCTATCCACAAATC
TCAAGGTAGCGAATTTCAGGTTGTTATTCTGCCAATCACACGTCAGAGTCACCGACTCTTGCAGCGTAACCTTATCTATA
CTGCTATTACACGCTCAAAAAGTAAGTTAGTCATGCTGGGAGAAATTGCTGCCTTTGACTACGCGATTAAAAACGAAGGT
GCTAAACGCAACACTTACCTCGTCGAGCGTTTCACAGGAGACGAAGAACTCCCTGAAATAGATTCTTCTGAGAGCATCAC
TGATTCTGAAATTCAAGAACAAGAAACAGTTAAAAGCGCTCCTTCAAACTTCGAAGAAGAAAATTCGTCTAAAAAAGCTG
AACAACTCAGCTTGGATATTGAGGAAGAACTTGAAACTGAAGAGCCAAAAATTTATCGCCTAACAGAAGAAAATATGGCA
TTTATCGATCCAATGATTGGTATCACCCAAGAAGATATCGAACAATTTTTTAAACGTTCATAA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-635)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

AAA domain (AAA_30)

(331-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.933

91.463

0.393