Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AAGF34_RS09085 Genome accession   NZ_CP152376
Coordinates   1921860..1922966 (+) Length   368 a.a.
NCBI ID   WP_342620293.1    Uniprot ID   -
Organism   Rhodoferax sp. GW822-FHT02A01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1916860..1927966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGF34_RS09055 (AAGF34_09055) - 1916990..1917472 (+) 483 WP_342620287.1 SET domain-containing protein-lysine N-methyltransferase -
  AAGF34_RS09060 (AAGF34_09060) - 1917606..1918400 (+) 795 WP_342620288.1 biotin--[acetyl-CoA-carboxylase] ligase -
  AAGF34_RS09065 (AAGF34_09065) - 1918402..1919061 (+) 660 WP_342620289.1 SPOR domain-containing protein -
  AAGF34_RS09070 (AAGF34_09070) - 1919044..1920516 (-) 1473 WP_342620290.1 sensor histidine kinase N-terminal domain-containing protein -
  AAGF34_RS09075 (AAGF34_09075) - 1920513..1921187 (-) 675 WP_342620291.1 response regulator transcription factor -
  AAGF34_RS09080 (AAGF34_09080) - 1921233..1921715 (-) 483 WP_342620292.1 MarR family winged helix-turn-helix transcriptional regulator -
  AAGF34_RS09085 (AAGF34_09085) recA 1921860..1922966 (+) 1107 WP_342620293.1 recombinase RecA Machinery gene
  AAGF34_RS09090 (AAGF34_09090) recX 1922988..1923437 (+) 450 WP_342620294.1 recombination regulator RecX -
  AAGF34_RS09095 (AAGF34_09095) argC 1923766..1924689 (-) 924 WP_342620295.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  AAGF34_RS09100 (AAGF34_09100) sucC 1924892..1926052 (+) 1161 WP_342619655.1 ADP-forming succinate--CoA ligase subunit beta -
  AAGF34_RS09105 (AAGF34_09105) sucD 1926181..1927074 (+) 894 WP_342620296.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39479.35 Da        Isoelectric Point: 5.9107

>NTDB_id=988743 AAGF34_RS09085 WP_342620293.1 1921860..1922966(+) (recA) [Rhodoferax sp. GW822-FHT02A01]
MDAPVKNPNNTNGANTEKAKALQVALAQIEKQFGKGTIMRLGEGEVIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGP
ESSGKTTLTLQVVAEMQKQGGQCAFVDAEHALDIQYAQKLGVNLQDLLISQPDTGEQALEIVDSLVRSGAVDLIIVDSVA
ALTPKAELEGEMGDSLPGLQARLMSQALRKLTAHIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRR
TGTIKKGEESIGNETKVKVVKNKVAPPFKTAEFDILFGEGISRHGEIIDMGVNAGILEKSGAWYAYQGEKIGQGRDNARE
FLRENADLSVEIENKVRESLGIPLLPVAEVEKVKGKKADKADKADKAA

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=988743 AAGF34_RS09085 WP_342620293.1 1921860..1922966(+) (recA) [Rhodoferax sp. GW822-FHT02A01]
ATGGACGCACCCGTCAAGAACCCCAACAACACGAATGGCGCCAACACCGAAAAAGCCAAGGCGCTGCAAGTCGCGCTGGC
GCAGATCGAAAAGCAGTTCGGCAAAGGCACCATCATGCGCCTGGGTGAGGGCGAGGTGATCGAGGACATCCAGGTGGTCT
CCACCGGCTCGCTGGGGCTGGATATCGCTCTGGGCGTGGGCGGCCTGCCGCGTGGCCGCGTCGTGGAAATCTACGGCCCG
GAATCCTCCGGCAAGACCACGCTGACACTGCAAGTCGTGGCCGAAATGCAAAAGCAAGGTGGCCAATGTGCTTTCGTGGA
TGCCGAGCACGCACTGGACATCCAGTACGCGCAAAAACTGGGCGTGAACCTGCAGGACCTGCTGATCAGCCAACCCGACA
CCGGTGAACAAGCCCTGGAAATCGTCGACAGCCTGGTGCGTTCCGGCGCGGTCGATCTGATCATCGTGGACTCGGTGGCG
GCACTGACCCCCAAGGCCGAACTCGAAGGCGAAATGGGCGATTCCCTGCCCGGCCTGCAAGCCCGTCTGATGAGCCAGGC
GCTGCGCAAGCTCACCGCCCACATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCG
TGATGTTCGGCTCGCCCGAAACCACCACCGGCGGCAATGCGCTCAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGT
ACCGGCACCATCAAGAAGGGTGAGGAATCCATCGGCAACGAGACCAAGGTCAAGGTGGTCAAGAACAAGGTGGCGCCTCC
CTTCAAGACGGCCGAGTTCGACATCCTGTTCGGCGAAGGCATCAGCCGCCATGGCGAAATCATCGATATGGGCGTGAACG
CCGGCATCCTGGAAAAATCCGGCGCCTGGTATGCCTACCAGGGCGAAAAAATCGGCCAGGGCCGCGACAACGCCCGCGAA
TTCCTGCGCGAAAACGCCGACTTGTCGGTGGAAATTGAAAACAAGGTTCGCGAGTCCCTGGGCATTCCACTGCTGCCGGT
GGCCGAGGTGGAAAAGGTCAAGGGCAAGAAGGCTGACAAAGCCGATAAAGCAGACAAGGCTGCGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.122

88.859

0.712
  recA Neisseria gonorrhoeae strain FA1090

71.646

89.13

0.639
  recA Neisseria gonorrhoeae MS11

71.646

89.13

0.639
  recA Neisseria gonorrhoeae MS11

71.646

89.13

0.639
  recA Pseudomonas stutzeri DSM 10701

72.755

87.772

0.639
  recA Acinetobacter baylyi ADP1

71.517

87.772

0.628
  recA Acinetobacter baumannii D1279779

70.588

87.772

0.62
  recA Glaesserella parasuis strain SC1401

70.37

88.043

0.62
  recA Vibrio cholerae strain A1552

68.712

88.587

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.712

88.587

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.97

91.033

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.871

88.587

0.592
  recA Helicobacter pylori 26695

62.609

93.75

0.587
  recA Helicobacter pylori strain NCTC11637

62.609

93.75

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

88.859

0.573
  recA Streptococcus mutans UA159

59.04

96.196

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

62.763

90.489

0.568
  recA Lactococcus lactis subsp. cremoris KW2

61.31

91.304

0.56
  recA Streptococcus pyogenes NZ131

60.294

92.391

0.557
  recA Streptococcus pneumoniae Rx1

60.121

89.946

0.541
  recA Streptococcus pneumoniae D39

60.121

89.946

0.541
  recA Streptococcus pneumoniae R6

60.121

89.946

0.541
  recA Streptococcus pneumoniae TIGR4

60.121

89.946

0.541
  recA Streptococcus mitis NCTC 12261

59.819

89.946

0.538
  recA Streptococcus mitis SK321

59.819

89.946

0.538
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.125

87.228

0.524

Multiple sequence alignment