Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   AAD080_RS14545 Genome accession   NZ_CP152307
Coordinates   3199551..3200366 (+) Length   271 a.a.
NCBI ID   WP_342607725.1    Uniprot ID   -
Organism   Vibrio tritonius strain JCM 16457 isolate MA35     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3194551..3205366
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAD080_RS14530 - 3195772..3198093 (+) 2322 WP_342607724.1 Tex family protein -
  AAD080_RS14535 - 3198206..3198676 (-) 471 WP_068715539.1 ATP-dependent Lon protease -
  AAD080_RS14540 bioH 3198801..3199574 (-) 774 WP_068715540.1 pimeloyl-ACP methyl ester esterase BioH -
  AAD080_RS14545 comF 3199551..3200366 (+) 816 WP_342607725.1 phosphoribosyltransferase family protein Machinery gene
  AAD080_RS14550 nfuA 3200461..3201048 (+) 588 WP_342607726.1 Fe-S biogenesis protein NfuA -
  AAD080_RS14555 nudE 3201169..3201750 (+) 582 WP_225250367.1 ADP compounds hydrolase NudE -
  AAD080_RS14560 cysQ 3201755..3202582 (+) 828 WP_225250366.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  AAD080_RS14565 - 3202633..3203385 (-) 753 WP_225250365.1 type II secretion system protein N -
  AAD080_RS14570 - 3203387..3203896 (-) 510 WP_068715552.1 type II secretion system protein M -
  AAD080_RS14575 gspL 3203909..3205123 (-) 1215 WP_342607727.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 271 a.a.        Molecular weight: 30980.23 Da        Isoelectric Point: 8.9188

>NTDB_id=988238 AAD080_RS14545 WP_342607725.1 3199551..3200366(+) (comF) [Vibrio tritonius strain JCM 16457 isolate MA35]
MPVQLSAHSQTLLLFSTLASQQEKHNQTHYLALVIAMVSNWRQKTIRSLTPALCHLCRLALAPTDQHYFCHACLAQFPLM
PRCKTCGLITTKPVDMCGRCLKKPPIWHSLTCIGDYHYPLSQLTHQFKYQRAFWLAPPLVQLLAEHIVEPAPVIAAVPLH
WRRYLWRGFNQSDLLAQQLSQKIGCEYWPSLFHRIRATPHQQGLSRRQRLTNLQGVFNLTSLPYPVDHIAIIDDVVTTGS
TVKQLCRLLLDVGVQRVDIYCLCRTPEPSDS

Nucleotide


Download         Length: 816 bp        

>NTDB_id=988238 AAD080_RS14545 WP_342607725.1 3199551..3200366(+) (comF) [Vibrio tritonius strain JCM 16457 isolate MA35]
TTGCCAGTACAACTCAGTGCTCATTCACAAACTCTCCTACTTTTTTCCACCTTAGCCAGCCAACAAGAAAAGCATAATCA
AACCCATTATCTTGCACTGGTTATTGCTATGGTATCGAATTGGCGACAAAAAACCATCCGCTCACTCACTCCTGCATTAT
GCCATTTGTGCCGCTTAGCGTTAGCACCAACCGATCAACACTATTTTTGTCACGCTTGTTTGGCACAATTTCCCCTCATG
CCGCGCTGCAAGACCTGTGGGCTGATAACGACAAAGCCAGTGGACATGTGCGGCCGTTGTCTAAAAAAGCCGCCAATTTG
GCACTCTTTAACTTGTATTGGTGATTATCACTATCCTTTGAGCCAGCTTACCCATCAATTCAAATATCAACGCGCGTTTT
GGTTAGCCCCGCCACTGGTGCAGTTGCTTGCCGAACACATTGTAGAACCAGCTCCTGTGATTGCGGCGGTACCTCTACAT
TGGCGTCGTTACCTGTGGCGCGGGTTCAACCAAAGCGATCTACTTGCGCAGCAACTGAGTCAAAAAATAGGGTGCGAATA
CTGGCCTAGCCTATTTCATCGCATTCGTGCCACACCGCATCAGCAAGGGCTATCTCGTCGTCAAAGACTCACCAACTTAC
AGGGTGTATTTAATTTAACATCACTACCTTATCCTGTTGATCATATTGCAATTATTGATGACGTAGTGACAACAGGAAGT
ACAGTAAAACAATTGTGTCGCTTATTACTTGATGTTGGCGTACAAAGAGTGGATATTTACTGCTTATGTCGTACTCCTGA
ACCGTCCGATTCTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(212-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

55.691

90.775

0.506
  comF Vibrio campbellii strain DS40M4

42.917

88.561

0.38

Multiple sequence alignment