Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   R8615_RS09670 Genome accession   NZ_AP026929
Coordinates   1875887..1876333 (-) Length   148 a.a.
NCBI ID   WP_001811371.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701114     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1870887..1881333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8615_RS09640 (PC1101_18850) - 1871623..1872447 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  R8615_RS09645 (PC1101_18860) rnpA 1872422..1872793 (-) 372 WP_000739247.1 ribonuclease P protein component -
  R8615_RS09650 - 1872810..1872941 (-) 132 WP_000768904.1 hypothetical protein -
  R8615_RS09655 (PC1101_18870) - 1872942..1874132 (-) 1191 WP_000167765.1 acetate kinase -
  R8615_RS09660 (PC1101_18880) comYH 1874183..1875136 (-) 954 WP_000345122.1 class I SAM-dependent methyltransferase Machinery gene
  R8615_RS09665 (PC1101_18890) - 1875197..1875784 (-) 588 WP_000679779.1 class I SAM-dependent methyltransferase -
  R8615_RS09670 (PC1101_18900) comGG/cglG 1875887..1876333 (-) 447 WP_001811371.1 competence type IV pilus minor pilin ComGG Machinery gene
  R8615_RS09675 (PC1101_18910) comGF/cglF 1876311..1876772 (-) 462 WP_000250539.1 competence type IV pilus minor pilin ComGF Machinery gene
  R8615_RS09680 (PC1101_18920) comGE/cglE 1876735..1877037 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  R8615_RS09685 (PC1101_18930) comGD/cglD 1877000..1877404 (-) 405 WP_000588030.1 competence type IV pilus minor pilin ComGD Machinery gene
  R8615_RS09690 (PC1101_18940) comGC/cglC 1877397..1877723 (-) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  R8615_RS09695 (PC1101_18950) comGB/cglB 1877725..1878741 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  R8615_RS09700 (PC1101_18960) comGA/cglA/cilD 1878689..1879630 (-) 942 WP_000249555.1 competence type IV pilus ATPase ComGA Machinery gene
  R8615_RS09705 (PC1101_18970) - 1879705..1880070 (-) 366 WP_000286415.1 DUF1033 family protein -
  R8615_RS09710 (PC1101_18980) - 1880217..1881275 (-) 1059 WP_000649471.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 148 a.a.        Molecular weight: 17229.91 Da        Isoelectric Point: 10.5573

>NTDB_id=98695 R8615_RS09670 WP_001811371.1 1875887..1876333(-) (comGG/cglG) [Streptococcus pneumoniae strain PZ900701114]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQIAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTSKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKAEKKNQKRSLKRKRIPSQFNYNALNPE

Nucleotide


Download         Length: 447 bp        

>NTDB_id=98695 R8615_RS09670 WP_001811371.1 1875887..1876333(-) (comGG/cglG) [Streptococcus pneumoniae strain PZ900701114]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAATCGCCCACTATCAAGACTATGCTTTAAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGTCTAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGCGGAGAAAAAAAATCAGAAGAGAAGCCTGAAAAGAA
AGAGAATTCCTAGTCAATTCAACTATAATGCGTTGAATCCAGAATAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae D39

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae R6

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae TIGR4

94.872

79.054

0.75

  comGG/cglG Streptococcus mitis NCTC 12261

89.344

82.432

0.736

  comGG/cglG Streptococcus mitis SK321

86.066

82.432

0.709


Multiple sequence alignment