Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACAK30_RS15715 Genome accession   NZ_AP031579
Coordinates   3303221..3303583 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain JUNP406     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3298221..3308583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK30_RS15705 (JUNP406_3127) - 3300499..3302577 (-) 2079 WP_004745994.1 methyl-accepting chemotaxis protein -
  ACAK30_RS15710 - 3302624..3303160 (-) 537 WP_000729757.1 chemotaxis protein CheW -
  ACAK30_RS15715 (JUNP406_3128) pilH 3303221..3303583 (-) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  ACAK30_RS15720 (JUNP406_3129) pilG 3303607..3303990 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  ACAK30_RS15730 (JUNP406_3132) - 3305474..3306100 (+) 627 WP_369599427.1 hypothetical protein -
  ACAK30_RS15735 (JUNP406_3133) - 3306160..3307278 (+) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=98496 ACAK30_RS15715 WP_000101096.1 3303221..3303583(-) (pilH) [Acinetobacter baumannii strain JUNP406]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=98496 ACAK30_RS15715 WP_000101096.1 3303221..3303583(-) (pilH) [Acinetobacter baumannii strain JUNP406]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment