Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NSQ95_RS00820 Genome accession   NZ_CP151993
Coordinates   154082..155038 (+) Length   318 a.a.
NCBI ID   WP_340886338.1    Uniprot ID   -
Organism   Psychrobacillus sp. FSL W7-1457     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 149082..160038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ95_RS00805 (NSQ95_00805) - 149177..149863 (+) 687 WP_340886329.1 GNAT family N-acetyltransferase -
  NSQ95_RS00810 (NSQ95_00810) helD 150072..152258 (+) 2187 WP_340886332.1 RNA polymerase recycling motor HelD -
  NSQ95_RS00815 (NSQ95_00815) - 152404..153639 (+) 1236 WP_340886334.1 MFS transporter -
  NSQ95_RS00820 (NSQ95_00820) ceuB 154082..155038 (+) 957 WP_340886338.1 ABC transporter permease Machinery gene
  NSQ95_RS00825 (NSQ95_00825) - 155025..155981 (+) 957 WP_169359282.1 iron chelate uptake ABC transporter family permease subunit -
  NSQ95_RS00830 (NSQ95_00830) - 155978..156742 (+) 765 WP_169359281.1 ATP-binding cassette domain-containing protein -
  NSQ95_RS00835 (NSQ95_00835) - 156961..158001 (+) 1041 WP_340886345.1 siderophore ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34804.95 Da        Isoelectric Point: 9.7049

>NTDB_id=983957 NSQ95_RS00820 WP_340886338.1 154082..155038(+) (ceuB) [Psychrobacillus sp. FSL W7-1457]
MRLWILVVATIILSFISLFIGAIDIKPSDLLDLDSQKTQIFIMSRLPRLMAIILAGAGMGIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGVIVSMIFFTNMSYMGQIFFSFSFALIGTFIFMQLLERIKFKDVMFVPLIGIMYGNIIGAISTFLGYEADVL
QNVDSFFLGSFTLIVSGRYELLYVAVPAIIIAYIYANKFTVAGMGEDFAKNLGLSYRTVLNIGLVIVAIISTTVVLTVGI
IPFLGLIVPNLVSLYLGDNLRKTIPHTIFMGAAFLLACDIISRLIVHPYEIPVNTTVAVIGSAIFLIMLFRGKAYAKK

Nucleotide


Download         Length: 957 bp        

>NTDB_id=983957 NSQ95_RS00820 WP_340886338.1 154082..155038(+) (ceuB) [Psychrobacillus sp. FSL W7-1457]
ATGAGATTATGGATATTAGTAGTAGCAACTATTATCCTATCCTTTATTTCGCTATTTATAGGTGCCATTGATATAAAACC
GAGTGATCTGCTTGATTTGGACTCCCAGAAGACCCAAATCTTTATAATGAGTCGATTGCCACGTTTAATGGCAATTATTT
TAGCTGGTGCAGGAATGGGTATTGCAGGCTTAATTATGCAAAGTTTAAGTCGGAACAAGTTCGTATCACCGACAACGGCC
GGTACGCTGGATGCAGCGAAACTAGGGGTCATTGTTTCGATGATATTCTTTACAAATATGTCTTATATGGGACAGATTTT
CTTTAGTTTTTCATTTGCACTAATCGGTACGTTTATTTTTATGCAGCTGCTTGAGCGTATTAAATTCAAGGATGTTATGT
TCGTACCTTTAATTGGTATTATGTATGGTAATATCATTGGTGCCATTTCCACATTCTTAGGATACGAAGCAGATGTCTTA
CAAAATGTAGATTCATTCTTCTTAGGGAGCTTTACACTAATTGTTTCTGGACGCTATGAACTACTATACGTAGCCGTACC
TGCCATTATTATAGCTTATATTTACGCAAACAAATTCACTGTAGCAGGCATGGGTGAGGACTTTGCAAAAAACTTAGGTT
TAAGTTATCGTACAGTGTTAAATATAGGTCTTGTCATTGTAGCTATTATTTCTACAACGGTCGTTTTAACGGTAGGTATT
ATACCGTTTTTAGGTTTAATCGTTCCGAACCTCGTTTCTTTGTATTTAGGAGATAATTTACGCAAGACAATACCGCATAC
TATTTTCATGGGAGCAGCATTCTTACTCGCATGTGATATTATCAGCCGTCTAATAGTTCATCCCTATGAGATTCCGGTAA
ATACAACAGTTGCCGTAATCGGCAGTGCGATCTTCTTAATTATGTTGTTTAGGGGGAAAGCATATGCGAAAAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.215

99.371

0.519

Multiple sequence alignment