Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   R8507_RS10805 Genome accession   NZ_AP026925
Coordinates   2088964..2090145 (+) Length   393 a.a.
NCBI ID   WP_317643318.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700097     
Function   degrading CSP; selective degradation of ComEA and ComEC (predicted from homology)   
Competence regulation

Genomic Context


Location: 2083964..2095145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8507_RS10765 (PC0094_20930) - 2085015..2085557 (+) 543 WP_001158266.1 TetR/AcrR family transcriptional regulator -
  R8507_RS10780 (PC0094_20940) comE 2085800..2086552 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  R8507_RS10785 (PC0094_20950) comD/comD1 2086549..2087874 (-) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  R8507_RS10790 (PC0094_20960) comC/comC1 2087895..2088020 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  R8507_RS10800 (PC0094_20970) rlmH 2088302..2088781 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  R8507_RS10805 (PC0094_20980) htrA 2088964..2090145 (+) 1182 WP_317643318.1 S1C family serine protease Regulator
  R8507_RS10810 (PC0094_20990) spo0J 2090203..2090961 (+) 759 WP_000410383.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 393 a.a.        Molecular weight: 41869.73 Da        Isoelectric Point: 6.8902

>NTDB_id=98394 R8507_RS10805 WP_317643318.1 2088964..2090145(+) (htrA) [Streptococcus pneumoniae strain PZ900700097]
MKHLKTFYKKWFQLLVVIVISFFSGALGSFSITQLTQKSSVNNSNNNSTITQTAYKNENSTTQAVNKVKDAVVSVITYSA
NRQNSVFGNDDTDTDSQRISSEGSGVIYKKNDKEAYIVTNNHVINGASKVDIRLSDGTKVPGEIVGADTFSDIAVVKISS
EKVTTVAEFGDSSKLTVGETAIAIGSPLGSEYANTVTQGIVSSLNRNISLRSEDGQAISTKAIQTDTAINPGNSGGPLIN
IQGQVIGITSSKIATNGGTSVEGLGFAIPANDAINIIEQLEKNGKVTRPALGIQMVNLSNVSTSDIRRLNIPSNVTSGVV
VRSVQSNMPANGHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYYRNGKEETTSIKLNKSSGDLES

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=98394 R8507_RS10805 WP_317643318.1 2088964..2090145(+) (htrA) [Streptococcus pneumoniae strain PZ900700097]
ATGAAACATCTAAAAACATTTTACAAAAAATGGTTTCAATTATTAGTCGTTATCGTCATTAGCTTTTTTAGTGGAGCCTT
GGGTAGTTTTTCAATAACTCAACTAACTCAAAAAAGTAGTGTAAACAACTCTAACAACAATAGTACTATTACACAAACTG
CCTATAAGAACGAAAATTCAACAACACAGGCTGTTAACAAAGTAAAAGATGCTGTTGTTTCTGTTATTACTTATTCGGCA
AACAGACAAAATAGCGTATTTGGCAATGATGATACTGACACAGATTCTCAGCGAATCTCTAGTGAAGGATCTGGAGTTAT
TTATAAAAAGAATGATAAAGAAGCTTACATCGTCACCAACAATCACGTTATAAATGGCGCCAGCAAAGTAGATATTAGAT
TGTCAGATGGGACTAAAGTACCTGGAGAAATTGTCGGAGCTGACACTTTCTCTGATATTGCTGTCGTCAAAATCTCTTCA
GAAAAAGTGACAACAGTAGCTGAGTTTGGTGATTCTAGTAAGTTAACTGTAGGAGAAACTGCTATTGCCATCGGTAGCCC
GTTAGGTTCTGAATATGCAAATACTGTCACTCAAGGTATCGTATCCAGTCTCAATAGAAATATATCCTTAAGATCGGAAG
ATGGACAAGCTATTTCTACAAAAGCCATCCAAACTGATACTGCTATTAACCCAGGTAACTCTGGCGGCCCACTGATCAAT
ATTCAAGGGCAGGTTATCGGAATTACCTCAAGTAAAATTGCTACAAATGGAGGAACATCTGTAGAAGGTCTTGGTTTCGC
AATTCCTGCAAATGATGCTATCAATATTATTGAACAGTTAGAAAAAAACGGAAAAGTGACGCGTCCAGCTTTGGGAATCC
AGATGGTTAATTTATCTAATGTGAGTACAAGCGACATCAGAAGACTCAATATTCCAAGTAATGTTACATCTGGTGTAGTT
GTTCGTTCGGTACAAAGTAATATGCCTGCCAATGGTCACCTTGAAAAATACGATGTAATTACAAAAGTAGATGACAAAGA
GATTGCTTCATCAACAGACTTACAAAGTGCTCTTTACAACCATTCTATCGGAGACACCATTAAGATAACCTACTATCGTA
ACGGGAAAGAAGAAACTACCTCTATCAAACTTAACAAGAGTTCAGGTGATTTAGAATCTTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus pneumoniae Rx1

99.237

100

0.992

  htrA Streptococcus pneumoniae D39

99.237

100

0.992

  htrA Streptococcus pneumoniae R6

99.237

100

0.992

  htrA Streptococcus pneumoniae TIGR4

99.237

100

0.992

  htrA Streptococcus mitis NCTC 12261

96.947

100

0.969

  htrA Streptococcus gordonii str. Challis substr. CH1

66.667

100

0.672

  htrA Streptococcus mutans UA159

54.569

100

0.547


Multiple sequence alignment