Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   NSQ11_RS11825 Genome accession   NZ_CP151987
Coordinates   2295425..2296195 (-) Length   256 a.a.
NCBI ID   WP_007501304.1    Uniprot ID   -
Organism   Bacillus sp. FSL W7-1582     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2290425..2301195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSQ11_RS11805 (NSQ11_11805) - 2290518..2291339 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  NSQ11_RS11810 (NSQ11_11810) - 2291365..2292003 (-) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  NSQ11_RS11815 (NSQ11_11815) glyS 2292170..2294215 (-) 2046 WP_342501110.1 glycine--tRNA ligase subunit beta -
  NSQ11_RS11820 (NSQ11_11820) glyQ 2294208..2295095 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  NSQ11_RS11825 (NSQ11_11825) recO 2295425..2296195 (-) 771 WP_007501304.1 DNA repair protein RecO Machinery gene
  NSQ11_RS11830 (NSQ11_11830) - 2296231..2296374 (-) 144 WP_008342408.1 YqzL family protein -
  NSQ11_RS11835 (NSQ11_11835) era 2296522..2297427 (-) 906 WP_007501305.1 GTPase Era -
  NSQ11_RS11840 (NSQ11_11840) - 2297420..2297818 (-) 399 WP_008342410.1 cytidine deaminase -
  NSQ11_RS11845 (NSQ11_11845) - 2297931..2298317 (-) 387 WP_008342413.1 diacylglycerol kinase family protein -
  NSQ11_RS11850 (NSQ11_11850) ybeY 2298295..2298774 (-) 480 WP_007501310.1 rRNA maturation RNase YbeY -
  NSQ11_RS11855 (NSQ11_11855) - 2298775..2300865 (-) 2091 WP_171465590.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29345.04 Da        Isoelectric Point: 8.4348

>NTDB_id=983622 NSQ11_RS11825 WP_007501304.1 2295425..2296195(-) (recO) [Bacillus sp. FSL W7-1582]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICRQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=983622 NSQ11_RS11825 WP_007501304.1 2295425..2296195(-) (recO) [Bacillus sp. FSL W7-1582]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCTAAGAAATCGAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAAAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATTAGAGATAACGGATTCATCTGTAGGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment