Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NSS96_RS06780 Genome accession   NZ_CP151980
Coordinates   1325867..1326439 (+) Length   190 a.a.
NCBI ID   WP_024426871.1    Uniprot ID   -
Organism   Bacillus sp. FSL W7-1336     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1320867..1331439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSS96_RS06750 (NSS96_06750) dapD 1320983..1321693 (+) 711 WP_008347987.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  NSS96_RS06755 (NSS96_06755) - 1321775..1322905 (+) 1131 WP_284382991.1 N-acetyldiaminopimelate deacetylase -
  NSS96_RS06760 (NSS96_06760) - 1322956..1323198 (+) 243 WP_284383965.1 YkuS family protein -
  NSS96_RS06765 (NSS96_06765) - 1323221..1324030 (-) 810 WP_024424726.1 mechanosensitive ion channel family protein -
  NSS96_RS06770 (NSS96_06770) ahpA 1324302..1324844 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  NSS96_RS06775 (NSS96_06775) - 1324927..1325385 (+) 459 WP_024424727.1 TlpA disulfide reductase family protein -
  NSS96_RS06780 (NSS96_06780) rok 1325867..1326439 (+) 573 WP_024426871.1 transcriptional regulator Rok Regulator
  NSS96_RS06785 (NSS96_06785) - 1326487..1327404 (-) 918 WP_065214311.1 sigmaE regulated sporulation protein -
  NSS96_RS06790 (NSS96_06790) - 1327490..1328071 (+) 582 WP_065214312.1 molybdenum cofactor guanylyltransferase -
  NSS96_RS06795 (NSS96_06795) - 1328101..1329117 (+) 1017 WP_061109774.1 thiazole biosynthesis adenylyltransferase ThiF -
  NSS96_RS06800 (NSS96_06800) glp 1329127..1330404 (+) 1278 WP_065214313.1 gephyrin-like molybdotransferase Glp -
  NSS96_RS06805 (NSS96_06805) mobB 1330386..1330910 (+) 525 WP_065214461.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  NSS96_RS06810 (NSS96_06810) - 1330907..1331398 (+) 492 WP_034281605.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 21543.50 Da        Isoelectric Point: 9.7309

>NTDB_id=983181 NSS96_RS06780 WP_024426871.1 1325867..1326439(+) (rok) [Bacillus sp. FSL W7-1336]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQQ
PAQPQSSSLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTF
MQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 573 bp        

>NTDB_id=983181 NSS96_RS06780 WP_024426871.1 1325867..1326439(+) (rok) [Bacillus sp. FSL W7-1336]
TTGTTTAATGAGAGGGAAGCGTTACGTTTACGATTGGAACAATTAAACGAGGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTACGTACAGAGAGAAAGACGGATTCACTGCCTGTATTAGCTGAGCTTGCTGCGCAAGAAATGAGAAGCTACCAGCAG
CCGGCACAACCACAATCATCATCTTTAGGAACAGGACAGCTAAACGGTGCGCCTGTAGGTATTCCTGAAGGATCGACAAG
ACGCAGAAGAGGCACAGCTCGTCCTGGCTCTAAGGCAGCGAAGCTTCGTGAAGCTGCGATTAAAACGTTAAAGCGTCATA
ATGCAGCGATTAAAAGCTCAGAGCTTCAAAAAGAGATCGAAAAAGAGAGCGGTCTTGAAATTCCAAATATGACAACGTTT
ATGCAAAGCTTAATTAAAATGTACCCTGAAGTGAAGAAGCCTTATCGCGGACAGTATATTTTAGAAGGCGACATTCAAAC
AGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.283

98.421

0.8

Multiple sequence alignment