Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA5   Type   Machinery gene
Locus tag   ABXS88_RS05480 Genome accession   NZ_AP031572
Coordinates   1150813..1151391 (+) Length   192 a.a.
NCBI ID   WP_353674173.1    Uniprot ID   -
Organism   Synechocystis sp. LKSZ1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1145813..1156391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXS88_RS05460 (OLK001_10630) pgsA 1146427..1146963 (+) 537 WP_353674169.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ABXS88_RS05465 (OLK001_10640) - 1147056..1148270 (+) 1215 WP_353674170.1 histidinol dehydrogenase -
  ABXS88_RS05470 (OLK001_10650) gloB 1148273..1149046 (-) 774 WP_353674171.1 hydroxyacylglutathione hydrolase -
  ABXS88_RS05475 (OLK001_10660) - 1149285..1150808 (+) 1524 WP_353674172.1 hypothetical protein -
  ABXS88_RS05480 (OLK001_10670) pilA/pilA5 1150813..1151391 (+) 579 WP_353674173.1 type II secretion system protein Machinery gene
  ABXS88_RS05485 (OLK001_10680) - 1151327..1151851 (+) 525 WP_353674174.1 type II secretion system protein -
  ABXS88_RS05490 (OLK001_10690) - 1151855..1152562 (+) 708 WP_353674175.1 type II secretion system protein -
  ABXS88_RS05495 (OLK001_10700) - 1152763..1153095 (-) 333 WP_353674176.1 DUF5615 family PIN-like protein -
  ABXS88_RS05500 (OLK001_10710) - 1153092..1153316 (-) 225 WP_353674784.1 DUF433 domain-containing protein -
  ABXS88_RS05505 (OLK001_10720) - 1153613..1153858 (-) 246 WP_353674177.1 hypothetical protein -
  ABXS88_RS05510 (OLK001_10730) - 1153957..1155024 (+) 1068 WP_353674178.1 D-alanine--D-alanine ligase family protein -
  ABXS88_RS05515 (OLK001_10740) - 1155056..1155517 (-) 462 WP_353674179.1 DUF2752 domain-containing protein -
  ABXS88_RS05520 (OLK001_10750) - 1155525..1155737 (-) 213 WP_353674180.1 TM2 domain-containing protein -
  ABXS88_RS05525 (OLK001_10760) - 1155816..1156298 (-) 483 WP_353674181.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20443.45 Da        Isoelectric Point: 9.7182

>NTDB_id=98173 ABXS88_RS05480 WP_353674173.1 1150813..1151391(+) (pilA/pilA5) [Synechocystis sp. LKSZ1]
MITLKSKLNPKLAWSVYRLVQPQPQAKGLTMLEVLVAMLIAFAFLTATLNAMVISAAMQVKAERQAQATYWIQKDLENIQ
AKAGTQASDSTKCTSSFSTSYAGSLNTSTGIPAVKYTSTDASPTYTTGTNSLVATVVASSILGRAYTMTRTTGGSDTNPQ
ILTVNYTVRNANDPTTLASLYTEVIPPKALAC

Nucleotide


Download         Length: 579 bp        

>NTDB_id=98173 ABXS88_RS05480 WP_353674173.1 1150813..1151391(+) (pilA/pilA5) [Synechocystis sp. LKSZ1]
ATGATCACCCTCAAATCGAAACTCAACCCGAAACTAGCTTGGTCTGTTTATCGGCTGGTACAACCTCAACCCCAGGCCAA
AGGCCTGACGATGCTAGAAGTCCTCGTGGCCATGCTAATCGCCTTTGCGTTTTTGACTGCTACCCTCAATGCCATGGTTA
TTTCTGCCGCGATGCAAGTCAAAGCAGAACGCCAGGCCCAGGCCACCTACTGGATTCAAAAAGACTTGGAAAATATCCAA
GCTAAGGCAGGTACTCAAGCTTCAGATTCAACAAAATGTACGTCTTCTTTTAGTACCTCCTATGCAGGTAGTCTAAATAC
ATCTACAGGGATTCCTGCTGTTAAATACACAAGCACGGATGCCAGCCCTACATATACGACGGGAACCAATTCACTGGTAG
CTACTGTTGTTGCCAGTTCTATACTAGGTCGAGCCTATACCATGACCAGAACAACTGGGGGTTCTGATACGAATCCACAG
ATCTTAACTGTTAATTACACCGTAAGAAATGCCAATGATCCCACAACCCTTGCCAGTCTTTATACTGAAGTTATCCCGCC
CAAGGCCCTGGCCTGCTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA5 Synechocystis sp. PCC 6803

43.114

86.979

0.375

Multiple sequence alignment