Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   NYE38_RS07320 Genome accession   NZ_CP151944
Coordinates   1406751..1407347 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus sp. EU63     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1401751..1412347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYE38_RS07290 (NYE38_07290) - 1401965..1402420 (+) 456 WP_340802905.1 flavodoxin -
  NYE38_RS07295 (NYE38_07295) dapD 1402502..1403212 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  NYE38_RS07300 (NYE38_07300) - 1403283..1404407 (+) 1125 WP_063636606.1 N-acetyldiaminopimelate deacetylase -
  NYE38_RS07305 (NYE38_07305) - 1404468..1404713 (+) 246 WP_003154596.1 YkuS family protein -
  NYE38_RS07310 (NYE38_07310) - 1404747..1405553 (-) 807 WP_025649509.1 mechanosensitive ion channel family protein -
  NYE38_RS07315 (NYE38_07315) - 1405841..1406299 (+) 459 WP_017417682.1 TlpA disulfide reductase family protein -
  NYE38_RS07320 (NYE38_07320) rok 1406751..1407347 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  NYE38_RS07325 (NYE38_07325) - 1407368..1408360 (-) 993 WP_017417683.1 hypothetical protein -
  NYE38_RS07330 (NYE38_07330) - 1408506..1409108 (+) 603 WP_257989135.1 molybdenum cofactor guanylyltransferase -
  NYE38_RS07335 (NYE38_07335) - 1409160..1410179 (+) 1020 WP_110085530.1 molybdopterin-synthase adenylyltransferase MoeB -
  NYE38_RS07340 (NYE38_07340) glp 1410197..1411489 (+) 1293 WP_065180238.1 gephyrin-like molybdotransferase Glp -
  NYE38_RS07345 (NYE38_07345) mobB 1411450..1411971 (+) 522 WP_029973679.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=981592 NYE38_RS07320 WP_003154591.1 1406751..1407347(+) (rok) [Bacillus sp. EU63]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=981592 NYE38_RS07320 WP_003154591.1 1406751..1407347(+) (rok) [Bacillus sp. EU63]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTAAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCGGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACGTTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATATCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment