Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   ACNM7T_RS10325 Genome accession   NZ_CP183041
Coordinates   2138851..2139987 (+) Length   378 a.a.
NCBI ID   WP_059368422.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Scm     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2133851..2144987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNM7T_RS10290 (ACNM7T_10290) - 2135255..2135680 (+) 426 WP_003153663.1 SDR family NAD(P)-dependent oxidoreductase -
  ACNM7T_RS10295 (ACNM7T_10295) sprB 2135714..2135890 (-) 177 WP_003153662.1 recombination directionality factor SprB -
  ACNM7T_RS10300 (ACNM7T_10300) - 2136253..2136510 (-) 258 WP_023356967.1 DUF3221 domain-containing protein -
  ACNM7T_RS10305 (ACNM7T_10305) - 2137061..2137297 (+) 237 WP_032869991.1 hypothetical protein -
  ACNM7T_RS10310 (ACNM7T_10310) - 2137423..2137797 (+) 375 WP_015240044.1 YoqO family protein -
  ACNM7T_RS10315 (ACNM7T_10315) - 2137814..2137892 (-) 79 Protein_1980 hypothetical protein -
  ACNM7T_RS10320 (ACNM7T_10320) - 2138031..2138483 (-) 453 WP_094031786.1 hypothetical protein -
  ACNM7T_RS10325 (ACNM7T_10325) rapF 2138851..2139987 (+) 1137 WP_059368422.1 Rap family tetratricopeptide repeat protein Regulator
  ACNM7T_RS10330 (ACNM7T_10330) - 2139977..2140159 (+) 183 WP_032870000.1 hypothetical protein -
  ACNM7T_RS10335 (ACNM7T_10335) - 2140464..2140919 (+) 456 Protein_1984 hypothetical protein -
  ACNM7T_RS10340 (ACNM7T_10340) - 2141197..2141535 (-) 339 WP_007612065.1 hypothetical protein -
  ACNM7T_RS10345 (ACNM7T_10345) - 2141766..2141966 (-) 201 WP_227749576.1 GNAT family N-acetyltransferase -
  ACNM7T_RS10350 (ACNM7T_10350) - 2142294..2142890 (-) 597 WP_094031787.1 SMI1/KNR4 family protein -
  ACNM7T_RS10355 (ACNM7T_10355) - 2142892..2144643 (-) 1752 WP_094031788.1 T7SS effector LXG polymorphic toxin -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44640.27 Da        Isoelectric Point: 4.8513

>NTDB_id=981576 ACNM7T_RS10325 WP_059368422.1 2138851..2139987(+) (rapF) [Bacillus amyloliquefaciens strain Scm]
MEQLISSSKVGLKINEWYKYIRLFSVADAEILKEEVKQEIELMEEDQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPKIS
DLSEEIESKQSDLKGILEYYFNFFHGMYEFEQYEYLKAISFYNRAEKKISIVPDEIERAEFHYKVAEVYYHMKQTHMSMH
HIVQAIETYKAHETYSIRVIQCSFVIGLNYLDMEYPEKAIPHFMNALKQAQEIDMPRLIGSSLYNLGLCSFTTGHMEKAL
EYFKEGVSIYQTNSLHNSSRLLDILLMLAKTHFKLSNTVDGKQVCEQGLMLSKDLNDDVLEKMFDFLMALFIENDKDRLF
KALNYLESKAMLSDVEDLATDAAMYYNVNEDHKVAIAFYEKVLYARKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=981576 ACNM7T_RS10325 WP_059368422.1 2138851..2139987(+) (rapF) [Bacillus amyloliquefaciens strain Scm]
TTGGAGCAATTGATCTCTTCTTCAAAAGTTGGCTTAAAAATCAATGAATGGTACAAATACATAAGGTTATTCAGTGTTGC
AGATGCAGAAATCTTGAAGGAAGAAGTGAAGCAAGAAATAGAGCTTATGGAAGAAGATCAAGATTTATTGTTGTACTATT
CGCTCATGTGTTTTCGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGACCTAAAATTTCA
GACTTATCAGAAGAGATCGAAAGTAAACAAAGCGATCTAAAAGGAATTCTTGAATATTATTTTAACTTTTTTCATGGGAT
GTATGAATTTGAACAGTACGAATATCTTAAAGCAATAAGTTTTTACAACCGAGCTGAAAAGAAGATATCTATTGTCCCCG
ATGAAATAGAGCGAGCTGAATTTCACTATAAAGTTGCTGAAGTGTACTATCACATGAAGCAAACCCACATGTCTATGCAT
CATATCGTTCAAGCAATAGAAACCTACAAAGCACACGAAACGTACTCAATAAGAGTAATCCAATGTTCATTCGTCATCGG
TCTGAATTATTTAGACATGGAGTATCCAGAAAAAGCAATACCGCATTTCATGAATGCATTAAAACAAGCACAAGAAATTG
ATATGCCACGGTTAATAGGTTCTTCTTTGTACAATCTCGGTTTATGCTCATTTACAACAGGACATATGGAGAAGGCATTG
GAGTATTTTAAAGAAGGCGTCTCAATTTATCAAACTAATTCTCTTCACAATTCTAGCCGACTGCTTGACATACTTTTAAT
GCTGGCAAAAACGCACTTTAAGTTGTCCAACACAGTTGATGGAAAACAAGTTTGTGAACAAGGTCTTATGCTGTCAAAGG
ATTTGAACGATGACGTATTAGAGAAAATGTTTGATTTTCTTATGGCTCTATTCATTGAGAATGACAAAGACCGACTTTTT
AAGGCTTTAAATTACTTAGAGTCAAAAGCAATGCTTTCAGACGTTGAAGACCTAGCGACTGATGCAGCAATGTATTATAA
TGTAAATGAAGACCATAAAGTAGCTATCGCCTTTTATGAGAAAGTGCTTTATGCCCGAAAACAAATTCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_8)

(222-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

45.407

100

0.458
  rapC Bacillus subtilis subsp. subtilis str. 168

45.238

100

0.452