Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   AAFX12_RS02730 Genome accession   NZ_CP151938
Coordinates   562487..563101 (-) Length   204 a.a.
NCBI ID   WP_005379994.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain TBV025     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 557487..568101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX12_RS02720 (AAFX12_02720) aceF 558749..560647 (+) 1899 WP_064368759.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  AAFX12_RS02725 (AAFX12_02725) lpdA 560915..562342 (+) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  AAFX12_RS02730 (AAFX12_02730) opaR 562487..563101 (-) 615 WP_005379994.1 transcriptional regulator OpaR Regulator
  AAFX12_RS02735 (AAFX12_02735) hpt 563421..563951 (+) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  AAFX12_RS02740 (AAFX12_02740) can 564030..564698 (-) 669 WP_005379996.1 carbonate dehydratase -
  AAFX12_RS02745 (AAFX12_02745) - 564980..566650 (+) 1671 WP_005379997.1 SulP family inorganic anion transporter -
  AAFX12_RS02750 (AAFX12_02750) - 566901..567818 (+) 918 WP_005380000.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23609.89 Da        Isoelectric Point: 6.4042

>NTDB_id=981358 AAFX12_RS02730 WP_005379994.1 562487..563101(-) (opaR) [Vibrio alginolyticus strain TBV025]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=981358 AAFX12_RS02730 WP_005379994.1 562487..563101(-) (opaR) [Vibrio alginolyticus strain TBV025]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTAGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAACTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACTAATGCGATGATCGAGCTTGTCAGCCAAGA
TTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGTGGCGAAGTGTGTGACCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAGCTGAA
ACATCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711

Multiple sequence alignment