Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   ABXG87_RS08945 Genome accession   NZ_AP031488
Coordinates   1905021..1905653 (-) Length   210 a.a.
NCBI ID   WP_049553485.1    Uniprot ID   -
Organism   Streptococcus salivarius strain NBRC 13956     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1900021..1910653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXG87_RS08920 (Ssa13956_17010) tsaD 1900627..1901640 (-) 1014 WP_049553489.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  ABXG87_RS08925 (Ssa13956_17020) rimI 1901640..1902095 (-) 456 WP_049553488.1 ribosomal protein S18-alanine N-acetyltransferase -
  ABXG87_RS08930 (Ssa13956_17030) tsaB 1902055..1902741 (-) 687 WP_049553487.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  ABXG87_RS08935 (Ssa13956_17040) - 1903003..1903233 (+) 231 WP_002947111.1 DNA-dependent RNA polymerase subunit epsilon -
  ABXG87_RS08940 (Ssa13956_17050) - 1903238..1904920 (+) 1683 WP_049553486.1 ribonuclease J -
  ABXG87_RS08945 (Ssa13956_17060) lytF 1905021..1905653 (-) 633 WP_049553485.1 CHAP domain-containing protein Regulator
  ABXG87_RS08950 (Ssa13956_17070) glnA 1905840..1907183 (-) 1344 WP_002884322.1 type I glutamate--ammonia ligase -
  ABXG87_RS08955 (Ssa13956_17080) - 1907232..1907606 (-) 375 WP_004183576.1 MerR family transcriptional regulator -
  ABXG87_RS08960 (Ssa13956_17090) - 1907780..1908283 (-) 504 WP_002884568.1 aromatic acid exporter family protein -
  ABXG87_RS08965 (Ssa13956_17100) - 1908471..1909670 (-) 1200 WP_002884739.1 phosphoglycerate kinase -
  ABXG87_RS08970 (Ssa13956_17110) - 1909813..1910091 (+) 279 WP_045769116.1 hypothetical protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 21947.92 Da        Isoelectric Point: 3.9129

>NTDB_id=98135 ABXG87_RS08945 WP_049553485.1 1905021..1905653(-) (lytF) [Streptococcus salivarius strain NBRC 13956]
MKTTKKAALAAASSALLLGLTVAQTVNADTYTVQNGDSFFGIASQYGVDPYQLAAENGMTIWSTIVPGGSLEVSGATTAV
EETTAASSSEVATTDSDATWNRYPVGQCTWGVKEVAPWASNWWGNGGDWAGSAASQGYAVGSTPVTGSIVCWTDGGYGHV
GYVTQVGQDGQIQILESNYQGQQQINNYRGWFDPQNSTTPGSVSYIYPGA

Nucleotide


Download         Length: 633 bp        

>NTDB_id=98135 ABXG87_RS08945 WP_049553485.1 1905021..1905653(-) (lytF) [Streptococcus salivarius strain NBRC 13956]
ATGAAAACTACAAAAAAAGCTGCTTTGGCAGCAGCCTCAAGTGCATTATTGCTCGGTCTTACAGTCGCACAAACAGTTAA
TGCTGATACTTATACAGTTCAAAATGGAGATTCATTCTTCGGGATTGCTAGTCAGTATGGTGTAGATCCTTACCAATTAG
CAGCTGAAAATGGCATGACTATTTGGTCAACAATTGTTCCTGGTGGAAGCTTGGAAGTTTCAGGTGCTACGACAGCAGTT
GAGGAAACAACAGCAGCTTCTTCTTCAGAGGTAGCAACTACTGATTCAGATGCTACTTGGAATCGTTATCCAGTTGGTCA
ATGTACATGGGGTGTTAAGGAAGTCGCTCCATGGGCAAGTAACTGGTGGGGTAATGGTGGCGATTGGGCAGGAAGCGCTG
CTAGCCAAGGTTATGCTGTAGGTTCAACACCTGTGACAGGATCAATTGTATGTTGGACTGATGGTGGTTATGGTCACGTT
GGTTATGTAACACAAGTTGGTCAAGATGGTCAAATTCAAATTTTGGAGTCAAATTATCAAGGTCAACAACAAATCAATAA
CTATCGTGGTTGGTTTGACCCACAAAACTCAACTACACCAGGTTCAGTATCTTACATTTATCCAGGTGCATAA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-68)

CHAP domain (CHAP)

(101-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii str. Challis substr. CH1

55.556

68.571

0.381

Multiple sequence alignment