Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   ACLQ7P_RS02415 Genome accession   NZ_CP181322
Coordinates   470915..471349 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis subsp. subtilis strain JCK-1398     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 465915..476349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLQ7P_RS02385 (ACLQ7P_02385) ydaD 466562..467422 (+) 861 WP_121591440.1 SDR family oxidoreductase -
  ACLQ7P_RS02390 (ACLQ7P_02390) lyxE 467438..467941 (+) 504 WP_088272170.1 D-lyxose ketol-isomerase -
  ACLQ7P_RS02395 (ACLQ7P_02395) ydaF 468030..468581 (+) 552 WP_041337761.1 GNAT family N-acetyltransferase -
  ACLQ7P_RS02400 (ACLQ7P_02400) ydaG 468659..469081 (+) 423 WP_095843480.1 pyridoxamine 5'-phosphate oxidase family protein -
  ACLQ7P_RS02405 (ACLQ7P_02405) amj 469586..470395 (+) 810 WP_041336819.1 lipid II flippase Amj -
  ACLQ7P_RS02410 (ACLQ7P_02410) ydzA 470440..470730 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  ACLQ7P_RS02415 (ACLQ7P_02415) lrpC 470915..471349 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  ACLQ7P_RS02420 (ACLQ7P_02420) topB 471414..473597 (+) 2184 WP_416247325.1 DNA topoisomerase III -
  ACLQ7P_RS02425 (ACLQ7P_02425) mutT 473710..474159 (+) 450 WP_017697018.1 8-oxo-dGTP diphosphatase MutT -
  ACLQ7P_RS02430 (ACLQ7P_02430) poxB 474226..475950 (+) 1725 WP_416247326.1 pyruvate oxidase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=979182 ACLQ7P_RS02415 WP_003246585.1 470915..471349(+) (lrpC) [Bacillus subtilis subsp. subtilis strain JCK-1398]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=979182 ACLQ7P_RS02415 WP_003246585.1 470915..471349(+) (lrpC) [Bacillus subtilis subsp. subtilis strain JCK-1398]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment