Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   WA044_RS16740 Genome accession   NZ_CP151554
Coordinates   3373258..3373947 (-) Length   229 a.a.
NCBI ID   WP_196479391.1    Uniprot ID   -
Organism   Bacillus velezensis strain E69     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3368258..3378947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WA044_RS16705 (WA044_16705) fliW 3368349..3368780 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  WA044_RS16710 (WA044_16710) - 3368810..3369379 (-) 570 WP_024085861.1 DUF6470 family protein -
  WA044_RS16715 (WA044_16715) flgL 3369470..3370387 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  WA044_RS16720 (WA044_16720) flgK 3370399..3371916 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  WA044_RS16725 (WA044_16725) - 3371932..3372414 (-) 483 WP_058906392.1 flagellar protein FlgN -
  WA044_RS16730 (WA044_16730) flgM 3372429..3372695 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  WA044_RS16735 (WA044_16735) - 3372765..3373184 (-) 420 WP_058906393.1 TIGR03826 family flagellar region protein -
  WA044_RS16740 (WA044_16740) comFC 3373258..3373947 (-) 690 WP_196479391.1 ComF family protein Machinery gene
  WA044_RS16745 (WA044_16745) - 3373953..3374237 (-) 285 WP_003151389.1 competence protein ComFB -
  WA044_RS16750 (WA044_16750) comFA 3374295..3375680 (-) 1386 WP_058906395.1 DEAD/DEAH box helicase Machinery gene
  WA044_RS16755 (WA044_16755) - 3375788..3376636 (-) 849 WP_058906396.1 DegV family protein -
  WA044_RS16760 (WA044_16760) degU 3376734..3377423 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WA044_RS16765 (WA044_16765) degS 3377500..3378663 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25317.99 Da        Isoelectric Point: 8.2933

>NTDB_id=979146 WA044_RS16740 WP_196479391.1 3373258..3373947(-) (comFC) [Bacillus velezensis strain E69]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTERRFLLWQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=979146 WA044_RS16740 WP_196479391.1 3373258..3373947(-) (comFC) [Bacillus velezensis strain E69]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAGGCGCTTTTTGCTGTGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGCGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGTTTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment