Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ACM59W_RS09385 Genome accession   NZ_CP181089
Coordinates   1981714..1982043 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain ST175LTH     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1976714..1987043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM59W_RS09370 (ACM59W_09370) - 1977514..1978470 (+) 957 WP_003104579.1 UDP-glucose 4-epimerase family protein -
  ACM59W_RS09375 (ACM59W_09375) - 1978472..1979491 (+) 1020 WP_003158833.1 MraY family glycosyltransferase -
  ACM59W_RS09380 (ACM59W_09380) - 1979526..1981523 (+) 1998 WP_023088173.1 polysaccharide biosynthesis protein -
  ACM59W_RS09385 (ACM59W_09385) comEA/comE1 1981714..1982043 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  ACM59W_RS09395 (ACM59W_09395) - 1982260..1983456 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  ACM59W_RS09400 (ACM59W_09400) uvrB 1983644..1985656 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=976531 ACM59W_RS09385 WP_003104586.1 1981714..1982043(+) (comEA/comE1) [Pseudomonas aeruginosa strain ST175LTH]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=976531 ACM59W_RS09385 WP_003104586.1 1981714..1982043(+) (comEA/comE1) [Pseudomonas aeruginosa strain ST175LTH]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment