Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   RBI96_RS25060 Genome accession   NZ_CP181075
Coordinates   5375210..5375575 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain LACPHL-BACT-2023-00013     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5370210..5380575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RBI96_RS25030 (RBI96_025030) pyrR 5370832..5371344 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  RBI96_RS25035 (RBI96_025035) ruvX 5371456..5371890 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  RBI96_RS25040 (RBI96_025040) - 5371890..5372459 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  RBI96_RS25045 (RBI96_025045) - 5372508..5373401 (-) 894 WP_003084580.1 TonB family protein -
  RBI96_RS25050 (RBI96_025050) gshB 5373548..5374501 (-) 954 WP_003100943.1 glutathione synthase -
  RBI96_RS25055 (RBI96_025055) pilG 5374756..5375163 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  RBI96_RS25060 (RBI96_025060) pilH 5375210..5375575 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  RBI96_RS25065 (RBI96_025065) - 5375626..5376162 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  RBI96_RS25070 (RBI96_025070) pilJ 5376247..5378295 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  RBI96_RS25075 (RBI96_025075) pilK 5378356..5379231 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=976484 RBI96_RS25060 WP_003084587.1 5375210..5375575(+) (pilH) [Pseudomonas aeruginosa strain LACPHL-BACT-2023-00013]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=976484 RBI96_RS25060 WP_003084587.1 5375210..5375575(+) (pilH) [Pseudomonas aeruginosa strain LACPHL-BACT-2023-00013]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364